RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 NDUFV1P49821 464 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 ALKBH1Q13686 389 aaKnown RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 CCNIQ14094 377 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 FRG1Q14331 258 aaKnown RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 NEDD9Q14511 834 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 KRT33BQ14525 404 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 SMC1AQ14683 1233 aaKnown RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 ASIC2Q16515 512 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 CCL15Q16663 113 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 LIPMQ5VYY2 423 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 FAM205BPQ63HN1 556 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 KRT39Q6A163 491 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 GALNTL5Q7Z4T8 443 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 KCTD20Q7Z5Y7 419 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 GAS2L3Q86XJ1 694 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 TMTC1Q8IUR5 882 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 ZNF366Q8N895 744 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 PDPRQ8NCN5 879 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 SIMC1Q8NDZ2 872 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 IL17RDQ8NFM7 739 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 SCAMP5Q8TAC9 235 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 SETD6Q8TBK2 473 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 RSRC1Q96IZ7 334 aaKnown RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 ZBTB45Q96K62 511 aaPredicted RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 Q96MF0 132 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 XRN2Q9H0D6 950 aaKnown RBP eCLIP2□□□□□ -2.09
SMCHD1-211ENST00000584897 UPF3AQ9H1J1 476 aaKnown RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 C6orf50Q9HD87 102 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 SEPT11Q9NVA2 429 aaKnown RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 FLRT1Q9NZU1 646 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 CGNQ9P2M7 1197 aaKnown RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 NKX1-2Q9UD57 310 aaPredicted RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 DBNLQ9UJU6 430 aaKnown RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 NAP1L2Q9ULW6 460 aaPredicted RBP2□□□□□ -2.09
SMCHD1-211ENST00000584897 SLC45A2Q9UMX9 530 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 MTMR6Q9Y217 621 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 FRMPD4Q14CM0 1322 aa2□□□□□ -2.09
SMCHD1-211ENST00000584897 TYW5A2RUC4 315 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 CCDC69A6NI79 296 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 GRXCR1A8MXD5 290 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 ASAP2O43150 1006 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 AHCYL1O43865 530 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 PLOD3O60568 738 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 TFRCP02786 760 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 ICAM1P05362 532 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 ANXA6P08133 673 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 CD63P08962 238 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 FCER1AP12319 257 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 TMEM11P17152 192 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 TRIM21P19474 475 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 RXRGP48443 463 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 STAT2P52630 851 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 LOXL3P58215 753 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 SEMA3BQ13214 749 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 TRIM29Q14134 588 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 ERV3-1Q14264 604 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 GRM4Q14833 912 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 SHHQ15465 462 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 SPOUT1Q5T280 376 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 FNDC7Q5VTL7 733 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 TMTC3Q6ZXV5 915 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 RHPN2Q8IUC4 686 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 UNC45BQ8IWX7 931 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 VPS52Q8N1B4 723 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 PSD4Q8NDX1 1056 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 SEMA6DQ8NFY4 1073 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 EXOC4Q96A65 974 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 FUBP1Q96AE4 644 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 PBKQ96KB5 322 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 FAM81BQ96LP2 452 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 CEP295NLQ96MC4 621 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 CINPQ9BW66 212 aaPredicted RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 RANBP17Q9H2T7 1088 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 TP63Q9H3D4 680 aaPredicted RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 ABHD16BQ9H3Z7 469 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 SYNPO2LQ9H987 977 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 SNX15Q9NRS6 342 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 IPO11Q9UI26 975 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 SLC12A4Q9UP95 1085 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 PCDHB7Q9Y5E2 793 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 CYP46A1Q9Y6A2 500 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 CDY1Q9Y6F8 540 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 ZNF532Q9HCE3 1301 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 GOLGA6L10A0A0M3HER8 536 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 BICDL2A1A5D9 508 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 B9A039 149 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 NT5C1B-RDH14C9J2C7 533 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 VILLO15195 856 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 YY2O15391 372 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 GPAA1O43292 621 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 TULP3O75386 442 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 ZNF189O75820 626 aaPredicted RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 IDH1O75874 414 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 NCR1O76036 304 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 BEST1O76090 585 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 MTA2O94776 668 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 HSPA4LO95757 839 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 PROS1P07225 676 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 ELFN1P0C7U0 828 aa1.99□□□□□ -2.09
SMCHD1-211ENST00000584897 AKR1A1P14550 325 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms