RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 SDCCAG3Q96C92 435 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 NMD3Q96D46 503 aaKnown RBP5.31□□□□□ -1.56
SRP54-211ENST00000556445 RNF125Q96EQ8 232 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 CDCA5Q96FF9 252 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 ERO1AQ96HE7 468 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 CCDC42Q96M95 316 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 EIF3CQ99613 913 aaKnown RBP5.31□□□□□ -1.56
SRP54-211ENST00000556445 TTYH3Q9C0H2 523 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 REXO4Q9GZR2 422 aaKnown RBP5.31□□□□□ -1.56
SRP54-211ENST00000556445 TOR3AQ9H497 397 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 SEPSECSQ9HD40 501 aaKnown RBP5.31□□□□□ -1.56
SRP54-211ENST00000556445 A1CFQ9NQ94 594 aaKnown RBP5.31□□□□□ -1.56
SRP54-211ENST00000556445 TBC1D7Q9P0N9 293 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 RABL2AQ9UBK7 228 aaPredicted RBP5.31□□□□□ -1.56
SRP54-211ENST00000556445 SLC9A2Q9UBY0 812 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 FBXL5Q9UKA1 691 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 PCDHA13Q9Y5I0 950 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 BZW2Q9Y6E2 419 aaKnown RBP5.31□□□□□ -1.56
SRP54-211ENST00000556445 EPN1Q9Y6I3 576 aaPredicted RBP5.31□□□□□ -1.56
SRP54-211ENST00000556445 LOC285556D6RIA3 1793 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 WDR90Q96KV7 1748 aa5.31□□□□□ -1.56
SRP54-211ENST00000556445 MYH9P35579 1960 aaKnown RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 TCRBV7S2A1N4TA0A589 114 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 USP27XA6NNY8 438 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 H3BNC9 293 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 OVOL3O00110 214 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 DDX39AO00148 427 aaKnown RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 NDC80O14777 642 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 CTIFO43310 598 aaKnown RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 THAP12O43422 761 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 ASNA1O43681 348 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 TSPAN9O75954 239 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 EGR2P11161 476 aaPredicted RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 SLC6A4P31645 630 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 DPP6P42658 865 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 POLE2P56282 527 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 GNG11P61952 73 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 RPS16P62249 146 aaKnown RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 CCNA1P78396 465 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 CDC42EP1Q00587 391 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 EPS8Q12929 822 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 DMP1Q13316 513 aaPredicted RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 ITGB3BPQ13352 177 aaPredicted RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 MAMLD1Q13495 774 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 GPR162Q16538 588 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 BAK1Q16611 211 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 EXOC3L4Q17RC7 722 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 SLC9C1Q4G0N8 1177 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 DUSP28Q4G0W2 176 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 XKR9Q5GH70 373 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 C10orf76Q5T2E6 689 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 SFMBT2Q5VUG0 894 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 FAM160B1Q5W0V3 765 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 TRIM65Q6PJ69 517 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 SYT10Q6XYQ8 523 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 GBP6Q6ZN66 633 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 INTS8Q75QN2 995 aaKnown RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 SZRD1Q7Z422 152 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 KIAA1328Q86T90 577 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 VPS36Q86VN1 386 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 ARMC8Q8IUR7 673 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 GLIS1Q8NBF1 620 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 MNS1Q8NEH6 495 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 OR1N1Q8NGS0 311 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 FAM120BQ96EK7 910 aaKnown RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 FAM167AQ96KS9 214 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 SNX22Q96L94 193 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 IFT74Q96LB3 600 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 FNBP1Q96RU3 617 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 JPH2Q9BR39 696 aaPredicted RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 TRIM6Q9C030 488 aaPredicted RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 TWSG1Q9GZX9 223 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 SPATC1LQ9H0A9 340 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 C11orf54Q9H0W9 315 aaPredicted RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 PABPC3Q9H361 631 aaKnown RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 MROH8Q9H579 483 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 RABEP2Q9H5N1 569 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 ERVMER34-1Q9H9K5 563 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 ERVK-5Q9HDB9 667 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 NRBP2Q9NSY0 501 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 SEPT11Q9NVA2 429 aaKnown RBP5.3□□□□□ -1.56
SRP54-211ENST00000556445 PNPOQ9NVS9 261 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 RIPK3Q9Y572 518 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 A0A0G2JMZ2 1700 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 KIAA1217Q5T5P2 1943 aa5.3□□□□□ -1.56
SRP54-211ENST00000556445 PAPPA2Q9BXP8 1791 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 ASTN1O14525 1302 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 ATP8B3O60423 1300 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 SYNJ2BP-COX16A0A087WUM0 186 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 CTAGE9A4FU28 777 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 ASB14A6NK59 587 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 RSPH10B2B2RC85 870 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 ADM5C9JUS6 153 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 CAPN9O14815 690 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 EXOC3O60645 756 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 FMO6PO60774 539 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 TACC1O75410 805 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 APBB3O95704 486 aa5.29□□□□□ -1.56
SRP54-211ENST00000556445 LMNAP02545 664 aaKnown RBP5.29□□□□□ -1.56
SRP54-211ENST00000556445 MT-ND5P03915 603 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms