RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.23□□□□□ -1.89
SCFD1-213ENST00000554776 FAM96BQ9Y3D0 163 aa3.23□□□□□ -1.89
SCFD1-213ENST00000554776 CKAP5Q14008 2032 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 IGKV2D-30A0A075B6S6 120 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 RPS10-NUDT3A0A1W2PQS6 291 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 SYNDIG1LA6NDD5 238 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 BECN2A8MW95 431 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 B4DLN1 442 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 IKBKBO14920 756 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 P4HA2O15460 535 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 SEC14L5O43304 696 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 LDB2O43679 373 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 BEST1O76090 585 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 TFP02787 698 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 MMP3P08254 477 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 TFPIP10646 304 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 ENO3P13929 434 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-213ENST00000554776 ARSBP15848 533 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 SRD5A1P18405 259 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 TKTP29401 623 aaKnown RBP3.22□□□□□ -1.89
SCFD1-213ENST00000554776 CDC25AP30304 524 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 ARL1P40616 181 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-213ENST00000554776 UBA7P41226 1012 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 CDKN2AP42771 156 aaKnown RBP3.22□□□□□ -1.89
SCFD1-213ENST00000554776 CLCN3P51790 818 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 CDH8P55286 799 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 ZP1P60852 638 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 IFI35P80217 286 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-213ENST00000554776 SORDQ00796 357 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 GPR18Q14330 331 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 ARHGEF6Q15052 776 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 HIST2H2ACQ16777 129 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-213ENST00000554776 ZNF284Q2VY69 593 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 ESCO2Q56NI9 601 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 PRAMEF19Q5SWL8 479 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 DCAF12L2Q5VW00 463 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 KIAA0930Q6ICG6 404 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-213ENST00000554776 TMCO3Q6UWJ1 677 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 LCTLQ6UWM7 567 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 CHST9Q7L1S5 443 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 MEPCEQ7L2J0 689 aaKnown RBP3.22□□□□□ -1.89
SCFD1-213ENST00000554776 BHLHA9Q7RTU4 235 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 ARHGAP12Q8IWW6 846 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 TAGAPQ8N103 731 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 TEX45Q8NA69 505 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 GJC3Q8NFK1 279 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 TMEM163Q8TC26 289 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 APOLD1Q96LR9 279 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 MXRA8Q9BRK3 442 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 STRA6Q9BX79 667 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 KRTAP1-5Q9BYS1 174 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 SH2D4AQ9H788 454 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 SPATS2LQ9NUQ6 558 aaKnown RBP3.22□□□□□ -1.89
SCFD1-213ENST00000554776 PCDHA7Q9UN72 937 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 CARD8Q9Y2G2 431 aa3.22□□□□□ -1.89
SCFD1-213ENST00000554776 A0A096LPK6 155 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 FAM237AA0A1B0GTK4 181 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 A8MV72 311 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-213ENST00000554776 USP17L23D6RBM5 183 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 EBAG9O00559 213 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 TCERG1O14776 1098 aaKnown RBP3.21□□□□□ -1.9
SCFD1-213ENST00000554776 RGS14O43566 566 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 SPRY3O43610 288 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 KIF1CO43896 1103 aaKnown RBP3.21□□□□□ -1.9
SCFD1-213ENST00000554776 ZNF500O60304 480 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-213ENST00000554776 RGS11O94810 467 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 SOX30O94993 753 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 OR2C1O95371 312 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 MT-CYBP00156 380 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-213ENST00000554776 TUBBP07437 444 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 IRF1P10914 325 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 HOXB6P17509 224 aaKnown RBP3.21□□□□□ -1.9
SCFD1-213ENST00000554776 PTPN2P17706 415 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 CCKBRP32239 447 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 SHMT1P34896 483 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 THPOP40225 353 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 GPR12P47775 334 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 GALCP54803 685 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 CDH12P55289 794 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 ROR2Q01974 943 aaKnown RBP3.21□□□□□ -1.9
SCFD1-213ENST00000554776 CSTF3Q12996 717 aaKnown RBP3.21□□□□□ -1.9
SCFD1-213ENST00000554776 ITGADQ13349 1161 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 ACVR2BQ13705 512 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 BECN1Q14457 450 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 CRYMQ14894 314 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 SOWAHAQ2M3V2 549 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 NCAPH2Q6IBW4 605 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 KRBA2Q6ZNG9 492 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 QSOX2Q6ZRP7 698 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 Q6ZTK2 550 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 BRINP3Q76B58 766 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 RBFAQ8N0V3 343 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 PARP16Q8N5Y8 322 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 LSMEM1Q8N8F7 131 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 C1orf131Q8NDD1 294 aaKnown RBP3.21□□□□□ -1.9
SCFD1-213ENST00000554776 MCPH1Q8NEM0 835 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 GPT2Q8TD30 523 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 SLC35F5Q8WV83 523 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 OIT3Q8WWZ8 545 aa3.21□□□□□ -1.9
SCFD1-213ENST00000554776 MIB2Q96AX9 1013 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms