RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 UCMAQ8WVF2 138 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 SEC14L1Q92503 715 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 ARHGEF2Q92974 986 aaKnown RBP5.09□□□□□ -1.59
VTI1B-202ENST00000553619 ATP2A3Q93084 1043 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 ELSPBP1Q96BH3 223 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 P2RY11Q96G91 374 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 CELF6Q96J87 481 aaKnown RBP5.09□□□□□ -1.59
VTI1B-202ENST00000553619 MSLNLQ96KJ4 702 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 SPATA13Q96N96 652 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 OLFM3Q96PB7 478 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 QKIQ96PU8 341 aaKnown RBP eCLIP5.09□□□□□ -1.59
VTI1B-202ENST00000553619 LGMNQ99538 433 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 SPON2Q9BUD6 331 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 APOL5Q9BWW9 433 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 BBS2Q9BXC9 721 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 TRIM31Q9BZY9 425 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 DPH5Q9H2P9 285 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 TTYH1Q9H313 450 aaPredicted RBP5.09□□□□□ -1.59
VTI1B-202ENST00000553619 ACBD3Q9H3P7 528 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 ANKZF1Q9H8Y5 726 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 USP29Q9HBJ7 922 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 ARFGAP3Q9NP61 516 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 SEPT10Q9P0V9 454 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 CLEC1BQ9P126 229 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 KLHL8Q9P2G9 620 aaPredicted RBP5.09□□□□□ -1.59
VTI1B-202ENST00000553619 IGSF9Q9P2J2 1179 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.09□□□□□ -1.59
VTI1B-202ENST00000553619 SNX24Q9Y343 169 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 SNX10Q9Y5X0 201 aa5.09□□□□□ -1.59
VTI1B-202ENST00000553619 V9GYY5 206 aaPredicted RBP5.09□□□□□ -1.59
VTI1B-202ENST00000553619 SHROOM3Q8TF72 1996 aa5.09□□□□□ -1.6
VTI1B-202ENST00000553619 C2orf16Q68DN1 1984 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ATG2AQ2TAZ0 1938 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 SHISA3A0PJX4 238 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 MAGEB16A2A368 324 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 TRDMT1O14717 391 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 NUAK1O60285 661 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 PRAMEF11O60813 436 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 PPFIA2O75334 1257 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 PENKP01210 267 aaPredicted RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 JCHAINP01591 159 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ASLP04424 464 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ATP5BP06576 529 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 MLNP12872 115 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 POLR2EP19388 210 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 CA4P22748 312 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 PTPN3P26045 913 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 RPL10P27635 214 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ITGA8P53708 1063 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 PLTPP55058 493 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ARL4CP56559 192 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 RPS24P62847 133 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 IFI35P80217 286 aaPredicted RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 BASP1P80723 227 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ZXDBP98169 803 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 RAD51Q06609 339 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ITKQ08881 620 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 NSUN2Q08J23 767 aaKnown RBP eCLIP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 MPP3Q13368 585 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 SMAD4Q13485 552 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 LAMB3Q13751 1172 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ZNF235Q14590 738 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 GRM3Q14832 879 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 DHCR24Q15392 516 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 TRIP13Q15645 432 aaPredicted RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 SLC14A2Q15849 920 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 SPDYCQ5MJ68 293 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 LY6G5CQ5SRR4 150 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 IZUMO3Q5VZ72 239 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 NAPEPLDQ6IQ20 393 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 FBXL19Q6PCT2 694 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 RHBDF2Q6PJF5 856 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 RNF111Q6ZNA4 994 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 CENPUQ71F23 418 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 TFAP2DQ7Z6R9 452 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 CROCCP2Q86T23 111 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ARHGAP12Q8IWW6 846 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 SUGP1Q8IWZ8 645 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 PDIK1LQ8N165 341 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 NDUFAF2Q8N183 169 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 CPA6Q8N4T0 437 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 SMRP1Q8NCR6 262 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 FBXO27Q8NI29 283 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 CSGALNACT1Q8TDX6 532 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 MAML1Q92585 1016 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ART4Q93070 314 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 WBP2Q969T9 261 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 HMCESQ96FZ2 354 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 TEKT5Q96M29 485 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ZSWIM3Q96MP5 696 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 FCRL5Q96RD9 977 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 FMO2Q99518 471 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 IL12RB2Q99665 862 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 FAM118BQ9BPY3 351 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 CCDC77Q9BR77 488 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 TRIM51Q9BSJ1 452 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 FEM1AQ9BSK4 669 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 TRMT61BQ9BVS5 477 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ACE2Q9BYF1 805 aaPredicted RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms