RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 FBXL20Q96IG2 436 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SLC9A7Q96T83 725 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 VAT1Q99536 393 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TBL1YQ9BQ87 522 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 GPATCH1Q9BRR8 931 aaKnown RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 EFHD1Q9BUP0 239 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TREX1Q9NSU2 369 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ARHGEF38Q9NXL2 777 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CROTQ9UKG9 612 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 FBXO5Q9UKT4 447 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SLC8A2Q9UPR5 921 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TCAF1Q9Y4C2 921 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TIMM13Q9Y5L4 95 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 MIA3Q5JRA6 1907 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 LTBP3Q9NS15 1303 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SH3PXD2BA1X283 911 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TRIM64A6NGJ6 449 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 LRRC14BA6NHZ5 514 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 MEIS3P2A8K0S8 358 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 FXYD1O00168 92 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 DFFAO00273 331 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CCL22O00626 93 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ACOX3O15254 700 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 HUS1O60921 280 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ATP6V1G1O75348 118 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 PMPCBO75439 489 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 HLA-DQB2P05538 268 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 HNRNPCP07910 306 aaKnown RBP eCLIP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CPB1P15086 417 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CAPN3P20807 821 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CD151P48509 253 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SLC5A3P53794 718 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CDH13P55290 713 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 FOXA1P55317 472 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 NUP107P57740 925 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 PMS2P3Q13401 168 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CAPRIN1Q14444 709 aaKnown RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 IHHQ14623 411 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 C16orf72Q14CZ0 275 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SAMD4BQ5PRF9 694 aaKnown RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 UBXN11Q5T124 520 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 PM20D1Q6GTS8 502 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CHST15Q7LFX5 561 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ANKRD23Q86SG2 305 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SLC15A3Q8IY34 581 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CMTR2Q8IYT2 770 aaKnown RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 OFCC1Q8IZS5 231 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SHCBP1Q8NEM2 672 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 PPTC7Q8NI37 304 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TANKQ92844 425 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 PBXIP1Q96AQ6 731 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 FAR2Q96K12 515 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TNIP3Q96KP6 325 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ZFP42Q96MM3 310 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TCF12Q99081 682 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 MED10Q9BTT4 135 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ADI1Q9BV57 179 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 NPLQ9BXD5 320 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 OSBPL6Q9BZF3 934 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 VPS45Q9NRW7 570 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 AGPAT4Q9NRZ5 378 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CCM2LQ9NUG4 571 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 FAIMQ9NVQ4 179 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ARMC1Q9NVT9 282 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CMTM6Q9NX76 183 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TUBA8Q9NY65 449 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ZNHIT2Q9UHR6 403 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 AURKCQ9UQB9 309 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TRAF6Q9Y4K3 522 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 BRCA2P51587 3418 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 COL1A2P08123 1366 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 A0A1B0GTL3 188 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 A0A1W2PPW3 197 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 HHLA1C9JL84 531 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ADM5C9JUS6 153 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 GABRDO14764 452 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PSMD3O43242 534 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 MAFKO60675 156 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 GPC4O75487 556 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SRP72O76094 671 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 CD4P01730 458 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 WARSP23381 471 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 MYF6P23409 242 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SOX11P35716 441 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 YAP1P46937 504 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PSMD7P51665 324 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 AFF1P51825 1210 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 CDKN2DP55273 166 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 MERTKQ12866 999 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SEPT6Q14141 434 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 GRB7Q14451 532 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PRPSAP1Q14558 356 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ZBED5Q49AG3 693 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 VPS26BQ4G0F5 336 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 KCTD21Q4G0X4 260 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 FGD3Q5JSP0 725 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ACBD5Q5T8D3 534 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 NOTUMQ6P988 496 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 XKR5Q6UX68 686 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 TMEM26Q6ZUK4 368 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms