RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 CUL3Q13618 768 aa17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 FRG1Q14331 258 aaKnown RBP17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 RFTN1Q14699 578 aaPredicted RBP17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 ARHGAP15Q53QZ3 475 aa17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 PRSS36Q5K4E3 855 aa17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 ATG16L1Q676U5 607 aa17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 ARID3BQ8IVW6 561 aaPredicted RBP17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 CCDC117Q8IWD4 279 aaPredicted RBP17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 ING5Q8WYH8 240 aa17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 GATA6Q92908 595 aa17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 PBX4Q9BYU1 374 aa17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 IARS2Q9NSE4 1012 aaKnown RBP17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 TDP1Q9NUW8 608 aa17.17■□□□□ 0.34
PCDHB17P-201ENST00000539533 MAGEA13PA6NCF6 341 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 MT-CO1P00395 513 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 SERPINF2P08697 491 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 DDX6P26196 483 aaKnown RBP eCLIP17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 CDK18Q07002 472 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 CNGA3Q16281 694 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 MPPE1Q53F39 396 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 CES4AQ5XG92 561 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 PDE12Q6L8Q7 609 aaKnown RBP17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 NET1Q7Z628 596 aaPredicted RBP17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 EZH1Q92800 747 aaPredicted RBP17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 E2F7Q96AV8 911 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 WWP1Q9H0M0 922 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 VPS51Q9UID3 782 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 E2F8A0AVK6 867 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 TMCC1O94876 653 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 VAPBO95292 243 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 CR2P20023 1033 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 NAB1Q13506 487 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 GALNT3Q14435 633 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 SCUBE1Q8IWY4 988 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 B4GALNT2Q8NHY0 566 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 MTBPQ96DY7 904 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 ZDHHC7Q9NXF8 308 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 SIRPGQ9P1W8 387 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 TXNDC16Q9P2K2 825 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 TAGLN3Q9UI15 199 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 PLA2G4CQ9UP65 541 aa17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 HELZP42694 1942 aaKnown RBP17.16■□□□□ 0.34
PCDHB17P-201ENST00000539533 TM7SF2O76062 418 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 ITGA2BP08514 1039 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 ARNTP27540 789 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 CCNFP41002 786 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 ABCG1P45844 678 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 CHI3L2Q15782 390 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 TRMT5Q32P41 509 aaKnown RBP17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 RIPOR1Q6ZS17 1223 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 ARHGAP22Q7Z5H3 698 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 STRA8Q7Z7C7 330 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 ITFG2Q969R8 447 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 ATXN7L3BQ96GX2 97 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 CPNE1Q99829 537 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 SLC13A1Q9BZW2 595 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 NKX2-4Q9H2Z4 354 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 ZNF395Q9H8N7 513 aaPredicted RBP17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 TREX1Q9NSU2 369 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 PCMTD2Q9NV79 361 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 MYOFQ9NZM1 2061 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 SPECC1L-ADORA2AF8WAN1 911 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 INSIG1O15503 277 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 CIB2O75838 187 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 PRKCGP05129 697 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 ANPEPP15144 967 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 CEBPBP17676 345 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 CD70P32970 193 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 GP5P40197 560 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 NRIP1P48552 1158 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 AQP5P55064 265 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 KDSRQ06136 332 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 LMAN2Q12907 356 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 MPP7Q5T2T1 576 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 TMEM25Q86YD3 366 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 ULK2Q8IYT8 1036 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 LEMD2Q8NC56 503 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 PTCD2Q8WV60 388 aaKnown RBP17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 FEM1CQ96JP0 617 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 PANX3Q96QZ0 392 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 LINC00597Q9H2U6 94 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 MRM3Q9HC36 420 aaKnown RBP17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 SCUBE2Q9NQ36 999 aa17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 FCF1Q9Y324 198 aaKnown RBP17.15■□□□□ 0.34
PCDHB17P-201ENST00000539533 K7ERQ8 282 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 ALDOAP04075 364 aaKnown RBP17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 CNTFP26441 200 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 ARCN1P48444 511 aaKnown RBP17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 GSTA3Q16772 222 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 TBC1D25Q3MII6 688 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 C6orf163Q5TEZ5 329 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 PDPK2PQ6A1A2 396 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 TMC5Q6UXY8 1006 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 NUDCD3Q8IVD9 361 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 ITFG1Q8TB96 612 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 GDPD5Q8WTR4 605 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 CLPTM1LQ96KA5 538 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 MKS1Q9NXB0 559 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 MARCOQ9UEW3 520 aaPredicted RBP17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 HEATR9A2RTY3 570 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms