RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 WDR64B1ANS9 1081 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ZNF487B1APH4 448 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ZBTB5O15062 677 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 SNAP29O95721 258 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 PRKCGP05129 697 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 APOA4P06727 396 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 UMPSP11172 480 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 CYP3A5P20815 502 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 CD9P21926 228 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 DNAJB1P25685 340 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 RFC2P35250 354 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 NOMO3P69849 1222 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 SEMA3BQ13214 749 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 GPR50Q13585 617 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 NFIXQ14938 502 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 KIZQ2M2Z5 673 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 GLRA4Q5JXX5 417 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ODR4Q5SWX8 454 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 PIK3R6Q5UE93 754 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 TMEM236Q5W0B7 351 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 DARS2Q6PI48 645 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 RETREG3Q86VR2 466 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 CMTR2Q8IYT2 770 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 ANKRD52Q8NB46 1076 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 FBXL13Q8NEE6 735 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 AURKBQ96GD4 344 aaPredicted RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 OPALINQ96PE5 141 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 FERD3LQ96RJ6 166 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 SECISBP2Q96T21 854 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 EBNA1BP2Q99848 306 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 CCDC32Q9BV29 185 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 TMEM168Q9H0V1 697 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 CCDC59Q9P031 241 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 CPSF3Q9UKF6 684 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 AUP1Q9Y679 476 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 PCM1Q15154 2024 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 KCNU1A8MYU2 1149 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 LOC110117498-PIK3R3F6TDL0 507 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 PIK3R2O00459 728 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 PI15O43692 258 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 LDLRP01130 860 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 CD1EP15812 388 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 ATP6V1B2P21281 511 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 PCMT1P22061 227 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 MMP8P22894 467 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 TRAF3Q13114 568 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 FADDQ13158 208 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 MFSD10Q14728 455 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 PLEKHG6Q3KR16 790 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 PARP15Q460N3 678 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 Q5BKY6 102 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 DALRD3Q5D0E6 543 aaKnown RBP12.46□□□□□ -0.41
USP3-203ENST00000538686 C6orf141Q5SZD1 244 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 GARNL3Q5VVW2 1013 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 TIGD3Q6B0B8 471 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 C8orf82Q6P1X6 216 aaPredicted RBP12.46□□□□□ -0.41
USP3-203ENST00000538686 HID1Q8IV36 788 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.46□□□□□ -0.41
USP3-203ENST00000538686 FNDC5Q8NAU1 212 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 ZNF384Q8TF68 577 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 YIPF6Q96EC8 236 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 ELMO2Q96JJ3 720 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 DMRTB1Q96MA1 342 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 ZNF577Q9BSK1 485 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 SLC25A23Q9BV35 468 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.46□□□□□ -0.41
USP3-203ENST00000538686 PLAC1Q9HBJ0 212 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 XPNPEP3Q9NQH7 507 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 SNX15Q9NRS6 342 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 FBXL12Q9NXK8 326 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 TLR6Q9Y2C9 796 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 IPPQ9Y573 584 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 NHSQ6T4R5 1651 aa12.46□□□□□ -0.41
USP3-203ENST00000538686 SLX4Q8IY92 1834 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 TYW5A2RUC4 315 aaKnown RBP12.46□□□□□ -0.42
USP3-203ENST00000538686 C3orf70A6NLC5 250 aaPredicted RBP12.46□□□□□ -0.42
USP3-203ENST00000538686 SNAP23O00161 211 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 MEN1O00255 615 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 NCAM2O15394 837 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 STX7O15400 261 aaKnown RBP12.46□□□□□ -0.42
USP3-203ENST00000538686 B4GAT1O43505 415 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 ACSL4O60488 711 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 SEMA3DO95025 777 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 HPRP00739 348 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 CALB1P05937 261 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 USP17L8P0C7I0 530 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 TFE3P19532 575 aaPredicted RBP12.46□□□□□ -0.42
USP3-203ENST00000538686 DYNLT1P63172 113 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 TNK1Q13470 666 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 MFSD13AQ14CX5 517 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 ARSKQ6UWY0 536 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 PLEKHM3Q6ZWE6 761 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 STRADAQ7RTN6 431 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 DNAJC10Q8IXB1 793 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 TCTE3Q8IZS6 198 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 TAB3Q8N5C8 712 aaPredicted RBP12.46□□□□□ -0.42
USP3-203ENST00000538686 PAPD5Q8NDF8 572 aaKnown RBP12.46□□□□□ -0.42
USP3-203ENST00000538686 RDH11Q8TC12 318 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 SEMA4DQ92854 862 aa12.46□□□□□ -0.42
USP3-203ENST00000538686 TNIP3Q96KP6 325 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms