RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ITGB4P16144 1822 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 SUV39H1O43463 412 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 IFNA6P05013 189 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 IDO1P14902 403 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 PTPN1P18031 435 aaKnown RBP10.67□□□□□ -0.7
CLIP1-209ENST00000537178 ITGA3P26006 1051 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 RAB10P61026 200 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 RIPK1Q13546 671 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 SWI5Q1ZZU3 235 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 RFTN2Q52LD8 501 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-209ENST00000537178 XKR6Q5GH73 641 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 AAGABQ6PD74 315 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 PLET1Q6UQ28 207 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 TRPV1Q8NER1 839 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 OR10H5Q8NGA6 315 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 AGAP11Q8TF27 550 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 FRMD6Q96NE9 622 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 CLIC5Q9NZA1 410 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 TNFSF13BQ9Y275 285 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 CACNA1SQ13698 1873 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 RFXANKO14593 260 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 RBMXL2O75526 392 aaKnown RBP10.67□□□□□ -0.7
CLIP1-209ENST00000537178 SLC6A2P23975 617 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 HTR1BP28222 390 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 LY6KQ17RY6 165 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 MIIPQ5JXC2 388 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 ULK3Q6PHR2 472 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 NANOGNBQ7Z5D8 188 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 CREG2Q8IUH2 290 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 NECTIN3Q9NQS3 549 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-209ENST00000537178 KIAA1551Q9HCM1 1747 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 AZIN1O14977 448 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 ANPEPP15144 967 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 PAX3P23760 479 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 PRKCIP41743 596 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 ZNF143P52747 638 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-209ENST00000537178 XIAPP98170 497 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 MED22Q15528 200 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 MEA1Q16626 185 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 TMEM119Q4V9L6 283 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 RAET1GQ6H3X3 334 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 ISLR2Q6UXK2 745 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 TPGS1Q6ZTW0 290 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 FAM83AQ86UY5 434 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 KBTBD7Q8WVZ9 684 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 TRMOQ9BU70 441 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 GPN1Q9HCN4 374 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-209ENST00000537178 SLC27A6Q9Y2P4 619 aa10.67□□□□□ -0.7
CLIP1-209ENST00000537178 WBP11Q9Y2W2 641 aaKnown RBP10.67□□□□□ -0.7
CLIP1-209ENST00000537178 FAM86C2PA6NEL3 165 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 TOP3BO95985 862 aaKnown RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 CDH3P22223 829 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 BUD31P41223 144 aaPredicted RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 AUHQ13825 339 aaKnown RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 FSCN1Q16658 493 aaKnown RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 OTOP1Q7RTM1 612 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 SH3RF1Q7Z6J0 888 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 PIK3C3Q8NEB9 887 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 C3orf14Q9HBI5 128 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 DNMT3LQ9UJW3 386 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 OGDHLQ9ULD0 1010 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 PHLPP1O60346 1717 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 FAM25EA8MYX2 175 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 CHP2O43745 196 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 PQBP1O60828 265 aaKnown RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 RECQL4O94761 1208 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 NADKO95544 446 aaPredicted RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 SERPINA6P08185 405 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 CCNB1P14635 433 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 RPL9P32969 192 aaKnown RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 PSEN2P49810 448 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 CYP4F2P78329 520 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 ROR2Q01974 943 aaKnown RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 CYP4F3Q08477 520 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 ZC3H12AQ5D1E8 599 aaKnown RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 GPR107Q5VW38 600 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 POLNQ7Z5Q5 900 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 ATCAYQ86WG3 371 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 GRIN3AQ8TCU5 1115 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 CHCHD6Q9BRQ6 235 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 SLC4A5Q9BY07 1137 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 ZYG11BQ9C0D3 744 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 C8orf4Q9NR00 106 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 KCNQ5Q9NR82 932 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 TMEM39AQ9NV64 488 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 EXD2Q9NVH0 621 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 TRPS1Q9UHF7 1281 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 FBXO5Q9UKT4 447 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 LCA5LO95447 670 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 ZSCAN5DPP0CG00 497 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 CES1P23141 567 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 PEX6Q13608 980 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 C18orf25Q96B23 403 aaPredicted RBP10.66□□□□□ -0.7
CLIP1-209ENST00000537178 KLHL32Q96NJ5 620 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 PNMA5Q96PV4 448 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 GAD1Q99259 594 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 PCYOX1Q9UHG3 505 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 MAGEL2Q9UJ55 1249 aa10.66□□□□□ -0.7
CLIP1-209ENST00000537178 STOML2Q9UJZ1 356 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms