RNA–Protein interactions for RNA: ENST00000502394.1

MATR3-231, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 589 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-231	ENST00000502394	ZNF844	Q08AG5	666 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	STAT4	Q14765	748 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	PTPRR	Q15256	657 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	TAF1A	Q15573	450 aa	Predicted RBP	12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	HSF5	Q4G112	596 aa	Predicted RBP	12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	FBXO43	Q4G163	708 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	ZNF805	Q5CZA5	627 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	KIAA0930	Q6ICG6	404 aa	Predicted RBP	12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	ESRP1	Q6NXG1	681 aa	Known RBP	12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	CASC4	Q6P4E1	433 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	CAPN12	Q6ZSI9	719 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	NLRP9	Q7RTR0	991 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	CHPF	Q8IZ52	775 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	OR13J1	Q8NGT2	312 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	UHMK1	Q8TAS1	419 aa	Known RBP	12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	PIP4K2C	Q8TBX8	421 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	BLOC1S5	Q8TDH9	187 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	PDCD6IP	Q8WUM4	868 aa	Known RBP	12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	FAM3C	Q92520	227 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	ARRDC3	Q96B67	414 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	ZNF669	Q96BR6	464 aa	Predicted RBP	12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	EID2B	Q96D98	161 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	SCRN2	Q96FV2	425 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	SH3GL2	Q99962	352 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	C19orf43	Q9BQ61	176 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	DHRS4	Q9BTZ2	278 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	TRABD	Q9H4I3	376 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	12.19	□□□□□ -0.46	8e-6	■■■□□ 18.6
MATR3-231	ENST00000502394	HACD3	Q9P035	362 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	SLC2A6	Q9UGQ3	507 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394	KCTD3	Q9Y597	815 aa		12.19	□□□□□ -0.46
MATR3-231	ENST00000502394		A0A1W2PQF6	199 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	KRBA1	A5PL33	1030 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	UPK3BL1	B0FP48	263 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	UPK3BL2	E5RIL1	263 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	SPINT1	O43278	529 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	RNF40	O75150	1001 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	ALPI	P09923	528 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	ITGB7	P26010	798 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	STX2	P32856	288 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	HNF1B	P35680	557 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	ARSD	P51689	593 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	METAP1	P53582	386 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	COPA	P53621	1224 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	EPHB1	P54762	984 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	SEC13	P55735	322 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	STARD6	P59095	220 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	LAMB3	Q13751	1172 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	SEPT6	Q14141	434 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	RASA2	Q15283	850 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	PARS2	Q7L3T8	475 aa	Known RBP	12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	TRMT11	Q7Z4G4	463 aa	Known RBP	12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	TDRP	Q86YL5	185 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	UNC5B	Q8IZJ1	945 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	12.18	□□□□□ -0.46	8e-81	■■□□□ 11.7
MATR3-231	ENST00000502394	STYX	Q8WUJ0	223 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	ATXN2L	Q8WWM7	1075 aa	Known RBP	12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	FAM131C	Q96AQ9	280 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	CERS2	Q96G23	380 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	SRPK1	Q96SB4	655 aa	Known RBP	12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	ROPN1B	Q9BZX4	212 aa	Predicted RBP	12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	RSPH9	Q9H1X1	276 aa	Predicted RBP	12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	ROPN1	Q9HAT0	212 aa	Predicted RBP	12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	ARHGEF3	Q9NR81	526 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	WNT16	Q9UBV4	365 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	ZNF711	Q9Y462	761 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	ARL5A	Q9Y689	179 aa		12.18	□□□□□ -0.46
MATR3-231	ENST00000502394	NPIPB15	A6NHN6	443 aa	Predicted RBP	12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	C16orf96	A6NNT2	1141 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	CXorf49	A8MYA2	514 aa	Predicted RBP	12.17	□□□□□ -0.46
MATR3-231	ENST00000502394		H7C0S8	307 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	KLF8	O95600	359 aa	Predicted RBP	12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	CRTAM	O95727	393 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	CHRNB1	P11230	501 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	CTPS1	P17812	591 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	LHCGR	P22888	699 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	ABL2	P42684	1182 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	WAS	P42768	502 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	FZD5	Q13467	585 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	NAB1	Q13506	487 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	EFTUD2	Q15029	972 aa	Known RBP eCLIP	12.17	□□□□□ -0.46	7e-11	■■■■□ 21.7
MATR3-231	ENST00000502394	CNGA3	Q16281	694 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	UGP2	Q16851	508 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	LONRF1	Q17RB8	773 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	KLHL38	Q2WGJ6	581 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	KBTBD12	Q3ZCT8	623 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	TNFAIP8L3	Q5GJ75	292 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	KIAA1211L	Q6NV74	962 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	CRTC1	Q6UUV9	634 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	MARK2	Q7KZI7	788 aa	Known RBP	12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	LYSMD3	Q7Z3D4	306 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	GLT6D1	Q7Z4J2	308 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	CNTN4	Q8IWV2	1026 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	CBARP	Q8N350	705 aa	Predicted RBP	12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	OR13C4	Q8NGS5	318 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	SLC44A1	Q8WWI5	657 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	SGSM3	Q96HU1	749 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	DNAJC1	Q96KC8	554 aa	Known RBP	12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	CYTH2	Q99418	400 aa		12.17	□□□□□ -0.46
MATR3-231	ENST00000502394	PPCS	Q9HAB8	311 aa		12.17	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms