RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 NEXN-AS1Q8NBZ9 246 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 C2CD4CQ8TF44 421 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 FRAT1Q92837 279 aaPredicted RBP4.29□□□□□ -1.72
UBR3-209ENST00000477461 KTI12Q96EK9 354 aaPredicted RBP4.29□□□□□ -1.72
UBR3-209ENST00000477461 ZNF333Q96JL9 665 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 FAM167BQ9BTA0 163 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 LHPPQ9H008 270 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.29□□□□□ -1.72
UBR3-209ENST00000477461 HYPKQ9NX55 129 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 RCE1Q9Y256 329 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 GPR52Q9Y2T5 361 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 USP16Q9Y5T5 823 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 TAF1LQ8IZX4 1826 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 TJP1Q07157 1748 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 ZNF831Q5JPB2 1677 aa4.29□□□□□ -1.72
UBR3-209ENST00000477461 RGPD3A6NKT7 1758 aaPredicted RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 RGPD4Q7Z3J3 1758 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 LOC102724159A0A0B4J2E5 919 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 DDX58O95786 925 aaKnown RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 MYL6BP14649 208 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 CHN1P15882 459 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 CRKLP46109 303 aaKnown RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 CCT5P48643 541 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 AMTP48728 403 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 OAZ1P54368 228 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 BNC1Q01954 994 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 AIMP1Q12904 312 aaKnown RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 ITPK1Q13572 414 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 CUL4BQ13620 913 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 ALKBH1Q13686 389 aaKnown RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 PWP2Q15269 919 aaKnown RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 TIGD6Q17RP2 521 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 KIF19Q2TAC6 998 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 KIF6Q6ZMV9 814 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 MON1BQ7L1V2 547 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 RRAGAQ7L523 313 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 FTSJ3Q8IY81 847 aaKnown RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 FSIP1Q8NA03 581 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 BICD2Q8TD16 824 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 RUBCNQ92622 972 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 ARRDC3Q96B67 414 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 API5Q9BZZ5 524 aaKnown RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 KCND3Q9UK17 655 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 PCDHGB3Q9Y5G1 929 aa4.28□□□□□ -1.72
UBR3-209ENST00000477461 COL5A3P25940 1745 aaPredicted RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 CICQ96RK0 1608 aaPredicted RBP4.28□□□□□ -1.72
UBR3-209ENST00000477461 PTPRCP08575 1304 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 C4BP0C0L5 1744 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 NPIPB13A6NJU9 1138 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 NPIPB5A8MRT5 1133 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 PRSS47A8MTI9 375 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 NPIPB4C9JG80 1138 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 SYN3O14994 580 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 HLA-DQA2P01906 255 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 TNNT1P13805 278 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 GNLYP22749 145 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 PIP4K2AP48426 406 aaPredicted RBP4.27□□□□□ -1.73
UBR3-209ENST00000477461 NEXNQ0ZGT2 675 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 MYBPC2Q14324 1141 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 SF3B4Q15427 424 aaKnown RBP eCLIP4.27□□□□□ -1.73
UBR3-209ENST00000477461 TMEM95Q3KNT9 176 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 ZNF672Q499Z4 452 aaPredicted RBP4.27□□□□□ -1.73
UBR3-209ENST00000477461 C8orf82Q6P1X6 216 aaPredicted RBP4.27□□□□□ -1.73
UBR3-209ENST00000477461 GSG1LQ6UXU4 331 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 ANKRD18AQ8IVF6 992 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 USP38Q8NB14 1042 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 CLPBQ9H078 707 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 IL25Q9H293 177 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 DDX31Q9H8H2 851 aaKnown RBP4.27□□□□□ -1.73
UBR3-209ENST00000477461 IL36RNQ9UBH0 155 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 KCNG2Q9UJ96 466 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 DERAQ9Y315 318 aa4.27□□□□□ -1.73
UBR3-209ENST00000477461 MYH14Q7Z406 1995 aaKnown RBP4.27□□□□□ -1.73
UBR3-209ENST00000477461 IGLV5-52A0A0A0MRZ9 124 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 TARSL2A2RTX5 802 aaKnown RBP4.26□□□□□ -1.73
UBR3-209ENST00000477461 B9A039 149 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 SERPINI2O75830 405 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 CLDN7O95471 211 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 ENO3P13929 434 aaPredicted RBP4.26□□□□□ -1.73
UBR3-209ENST00000477461 PRKCHP24723 683 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 RFC4P35249 363 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 PNPLA4P41247 253 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 PAPOLAP51003 745 aaKnown RBP4.26□□□□□ -1.73
UBR3-209ENST00000477461 TUBA1BP68363 451 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 THOC5Q13769 683 aaKnown RBP4.26□□□□□ -1.73
UBR3-209ENST00000477461 KRTAP24-1Q3LI83 254 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 CTXN3Q4LDR2 81 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 GORABQ5T7V8 394 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 TMEM268Q5VZI3 342 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 ATF7IPQ6VMQ6 1270 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 COPS6Q7L5N1 327 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 G2E3Q7L622 706 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 SYT13Q7L8C5 426 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 DEFB132Q7Z7B7 95 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 TRIM74Q86UV6 250 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 TRIM73Q86UV7 250 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 TMEM57Q8N5G2 664 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 FAM216AQ8WUB2 273 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 FAR1Q8WVX9 515 aa4.26□□□□□ -1.73
UBR3-209ENST00000477461 ARHGAP45Q92619 1136 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms