RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 TRIM44Q96DX7 344 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 MRGPRX2Q96LB1 330 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 CCDC114Q96M63 670 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 FCRL5Q96RD9 977 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 MCCC1Q96RQ3 725 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 VAT1Q99536 393 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 GPR174Q9BXC1 333 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 OSBPL1AQ9BXW6 950 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 FRMD8P1Q9BZ68 369 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 DUSP15Q9H1R2 295 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 GBA3Q9H227 469 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 ATP13A3Q9H7F0 1226 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 PCDH12Q9NPG4 1184 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 KCNK4Q9NYG8 393 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 KLHL8Q9P2G9 620 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 TRHDEQ9UKU6 1024 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 SCML1Q9UN30 329 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 ZFR2Q9UPR6 939 aaKnown RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 CHKBQ9Y259 395 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 PPIL1Q9Y3C6 166 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 FARP1Q9Y4F1 1045 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 TTLL3Q9Y4R7 772 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 PCDHB9Q9Y5E1 797 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 PIKFYVEQ9Y2I7 2098 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 URB1O60287 2271 aaKnown RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 TEX15Q9BXT5 2789 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 LOC285095A0A1B0GVY8 99 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 CFAP69A5D8W1 941 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 NPIPB15A6NHN6 443 aaPredicted RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 METTL12A8MUP2 240 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 RIOK3O14730 519 aaKnown RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 KHNYNO15037 678 aaKnown RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 SLC7A4O43246 635 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 LATO43561 262 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 AP1G1O43747 822 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 PMPCBO75439 489 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 WISP1O95388 367 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 SEMA4FO95754 770 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 SERPINF2P08697 491 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 ACADMP11310 421 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 LHCGRP22888 699 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 IVDP26440 423 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 MAOBP27338 520 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 SERPINA4P29622 427 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 OXTRP30559 389 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 STIP1P31948 543 aaKnown RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 DEKP35659 375 aaKnown RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 COILP38432 576 aaPredicted RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 MMP12P39900 470 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 PTGIRP43119 386 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 CHRNA4P43681 627 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 NEK3P51956 506 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 WNT3AP56704 352 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 RAD51Q06609 339 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 SPARCL1Q14515 664 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 GRM3Q14832 879 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 QPCTQ16769 361 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 ZNF284Q2VY69 593 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 FAXCQ5TGI0 409 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 DENND5AQ6IQ26 1287 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 BRAT1Q6PJG6 821 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 RANBP10Q6VN20 620 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 KDM7AQ6ZMT4 941 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 RFLNAQ6ZTI6 216 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 ZNF572Q7Z3I7 529 aaPredicted RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 KDELC2Q7Z4H8 507 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 PIP4P1Q86T03 277 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 TTC7BQ86TV6 843 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 TSPAN33Q86UF1 283 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 BBS5Q8N3I7 341 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 TAB3Q8N5C8 712 aaPredicted RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 PNPLA1Q8N8W4 532 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 GANCQ8TET4 914 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 MAIP1Q8WWC4 291 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 BIRC7Q96CA5 298 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 OMDQ99983 421 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 BTBD1Q9H0C5 482 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 DDX47Q9H0S4 455 aaKnown RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 ETNK1Q9HBU6 452 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 SGK2Q9HBY8 427 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 TMEM74BQ9NUR3 256 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 RSPH14Q9UHP6 348 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 ZNF148Q9UQR1 794 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 APC2O95996 2303 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 ANKRD17O75179 2603 aaKnown RBP7.02□□□□□ -1.29
LIMD1-204ENST00000474665 TMEM131Q92545 1883 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 PCDH15Q96QU1 1955 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 PTPN13Q12923 2485 aa7.02□□□□□ -1.29
LIMD1-204ENST00000474665 A0A087WV48 116 aa7.01□□□□□ -1.29
LIMD1-204ENST00000474665 A0A0J9YYE9 177 aa7.01□□□□□ -1.29
LIMD1-204ENST00000474665 A0A1W2PQU0 124 aa7.01□□□□□ -1.29
LIMD1-204ENST00000474665 TCRBV7S3A2A0A539 114 aa7.01□□□□□ -1.29
LIMD1-204ENST00000474665 IGLON5A6NGN9 336 aa7.01□□□□□ -1.29
LIMD1-204ENST00000474665 FAM47DPA6NHR8 397 aa7.01□□□□□ -1.29
LIMD1-204ENST00000474665 A8MX80 341 aa7.01□□□□□ -1.29
LIMD1-204ENST00000474665 ANKRD66B4E2M5 251 aa7.01□□□□□ -1.29
LIMD1-204ENST00000474665 AURKAO14965 403 aa7.01□□□□□ -1.29
LIMD1-204ENST00000474665 RAD51BO15315 384 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms