RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 ATXN2Q99700 1313 aaKnown RBP10.73□□□□□ -0.69
UBR4-208ENST00000459947 A0A0U1RQJ8 604 aa10.73□□□□□ -0.69
UBR4-208ENST00000459947 CACNB4O00305 520 aaPredicted RBP10.73□□□□□ -0.69
UBR4-208ENST00000459947 CSRP1P21291 193 aaKnown RBP10.73□□□□□ -0.69
UBR4-208ENST00000459947 TGM1P22735 817 aa10.73□□□□□ -0.69
UBR4-208ENST00000459947 METAP1P53582 386 aa10.73□□□□□ -0.69
UBR4-208ENST00000459947 DPTQ07507 201 aa10.73□□□□□ -0.69
UBR4-208ENST00000459947 RALGDSQ12967 914 aa10.73□□□□□ -0.69
UBR4-208ENST00000459947 PUM1Q14671 1186 aaKnown RBP eCLIP10.73□□□□□ -0.692e-9■□□□□ 8.8
UBR4-208ENST00000459947 COQ10AQ96MF6 247 aa10.73□□□□□ -0.69
UBR4-208ENST00000459947 SNX12Q9UMY4 172 aa10.73□□□□□ -0.69
UBR4-208ENST00000459947 ANKRD66B4E2M5 251 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 SLC31A1O15431 190 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 FLRT2O43155 660 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 PCDHGA12O60330 932 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 MMP20O60882 483 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 FGGP02679 453 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 PAFAH1B1P43034 410 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 STC1P52823 247 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 WNT3AP56704 352 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 DCDC1P59894 354 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 GNG11P61952 73 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 QPCTQ16769 361 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 STPG1Q5TH74 334 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 ESRP1Q6NXG1 681 aaKnown RBP10.72□□□□□ -0.69
UBR4-208ENST00000459947 KDELC1Q6UW63 502 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 MACC1Q6ZN28 852 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 DTD2Q96FN9 168 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 NCKIPSDQ9NZQ3 722 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 TNFRSF10CO14798 259 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 THEGLP0DJG4 465 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 MAT2AP31153 395 aaKnown RBP10.72□□□□□ -0.69
UBR4-208ENST00000459947 SEL1L3Q68CR1 1132 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 PTAR1Q7Z6K3 402 aaPredicted RBP10.72□□□□□ -0.69
UBR4-208ENST00000459947 TRIB3Q96RU7 358 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 TRMT1Q9NXH9 659 aaKnown RBP10.72□□□□□ -0.69
UBR4-208ENST00000459947 CHKBQ9Y259 395 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 A0A1B0GVT2 93 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 LOC285095A0A1B0GVY8 99 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 SPINT1O43278 529 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 MMP2P08253 660 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 ALPPL2P10696 532 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 FNTAP49354 379 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 ADCY2Q08462 1091 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 OASLQ15646 514 aaKnown RBP10.72□□□□□ -0.69
UBR4-208ENST00000459947 CNGA3Q16281 694 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 FSTL5Q8N475 847 aaPredicted RBP10.72□□□□□ -0.69
UBR4-208ENST00000459947 TP53I13Q8NBR0 393 aaPredicted RBP10.72□□□□□ -0.69
UBR4-208ENST00000459947 VOPP1Q96AW1 172 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 OSBPL9Q96SU4 736 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 RBM15Q96T37 977 aaKnown RBP eCLIP10.72□□□□□ -0.69
UBR4-208ENST00000459947 CDC6Q99741 560 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 USP29Q9HBJ7 922 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 EIF2B3Q9NR50 452 aaKnown RBP10.72□□□□□ -0.69
UBR4-208ENST00000459947 GPR27Q9NS67 375 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.72□□□□□ -0.69
UBR4-208ENST00000459947 PCDH15Q96QU1 1955 aa10.72□□□□□ -0.69
UBR4-208ENST00000459947 CDK4P11802 303 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 HNRNPKP61978 463 aaKnown RBP eCLIP10.71□□□□□ -0.69
UBR4-208ENST00000459947 SARNPP82979 210 aaKnown RBP10.71□□□□□ -0.69
UBR4-208ENST00000459947 CDK16Q00536 496 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 TUBB2AQ13885 445 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 SF3A2Q15428 464 aaKnown RBP10.71□□□□□ -0.69
UBR4-208ENST00000459947 KIAA2013Q8IYS2 634 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 MINDY1Q8N5J2 469 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 WRAP53Q9BUR4 548 aaKnown RBP10.71□□□□□ -0.69
UBR4-208ENST00000459947 TUBB2BQ9BVA1 445 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 SAE1Q9UBE0 346 aaPredicted RBP10.71□□□□□ -0.69
UBR4-208ENST00000459947 CSNK1G3Q9Y6M4 447 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 PRUNE2Q8WUY3 3088 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 A0A1B0GTQ1 180 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 LNP1A1A4G5 178 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 CCDC188H7C350 402 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 RECQL5O94762 991 aaPredicted RBP10.71□□□□□ -0.69
UBR4-208ENST00000459947 MAOBP27338 520 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 PFN3P60673 137 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 IRX4P78413 519 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 GCNT7Q6ZNI0 430 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 SYDE1Q6ZW31 735 aaPredicted RBP10.71□□□□□ -0.69
UBR4-208ENST00000459947 PARGQ86W56 976 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 CENPTQ96BT3 561 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 ELF4Q99607 663 aaPredicted RBP10.71□□□□□ -0.69
UBR4-208ENST00000459947 GTPBP2Q9BX10 602 aaKnown RBP10.71□□□□□ -0.69
UBR4-208ENST00000459947 GPR63Q9BZJ6 419 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 TMEM74BQ9NUR3 256 aa10.71□□□□□ -0.69
UBR4-208ENST00000459947 GPR89AB7ZAQ6 455 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 PMPCBO75439 489 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 CRTAMO95727 393 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 GPR89BP0CG08 455 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 LMAN1P49257 510 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 NFATC4Q14934 902 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 CYP1B1Q16678 543 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 PAPD7Q5XG87 772 aaKnown RBP10.71□□□□□ -0.7
UBR4-208ENST00000459947 CBARPQ8N350 705 aaPredicted RBP10.71□□□□□ -0.7
UBR4-208ENST00000459947 DCLK2Q8N568 766 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 WDR92Q96MX6 357 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 TBL1YQ9BQ87 522 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 ARNT2Q9HBZ2 717 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 ZNF711Q9Y462 761 aa10.71□□□□□ -0.7
UBR4-208ENST00000459947 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms