RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 OR9I1Q8NGQ6 314 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 OR13J1Q8NGT2 312 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 NSMCE3Q96MG7 304 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 TSGA13Q96PP4 275 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 TRIM8Q9BZR9 551 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 TLR8Q9NR97 1041 aaKnown RBP9.51□□□□□ -0.89
CUX1-206ENST00000437600 CCDC167Q9P0B6 97 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 GMPR2Q9P2T1 348 aaKnown RBP9.51□□□□□ -0.89
CUX1-206ENST00000437600 FAM50BQ9Y247 325 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 TLR6Q9Y2C9 796 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 KIAA1671Q9BY89 1806 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 LIN7AO14910 233 aaPredicted RBP9.51□□□□□ -0.89
CUX1-206ENST00000437600 HDAC3O15379 428 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 MAP3K7O43318 606 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 MMP2P08253 660 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 PIK3R1P27986 724 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 DPP6P42658 865 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 PRAMEP78395 509 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 MS4A2Q01362 244 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 PLD1Q13393 1074 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 DNAL1Q4LDG9 190 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 SIRPB2Q5JXA9 342 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 C9orf50Q5SZB4 431 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 ZYG11AQ6WRX3 759 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 ANKS3Q6ZW76 656 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 PPFIBP2Q8ND30 876 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 CMTM5Q96DZ9 223 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 IGSF21Q96ID5 467 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 CLSTN3Q9BQT9 956 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 SLC39A3Q9BRY0 314 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 ZBED2Q9BTP6 218 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 DRC3Q9H069 523 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 CWH43Q9H720 699 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 PIDD1Q9HB75 910 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 DNAJC28Q9NX36 388 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 NCF1BA6NI72 391 aaPredicted RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 SLC38A8A6NNN8 435 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 NCF1CA8MVU1 366 aaPredicted RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 TARM1B6A8C7 271 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 CAPN15O75808 1086 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 SUPT7LO94864 414 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 NCF1P14598 390 aaPredicted RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 PEX2P28328 305 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 MAGEA8P43361 318 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 SERPINH1P50454 418 aaKnown RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 SCNN1BP51168 640 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 GEMP55040 296 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 CSE1LP55060 971 aaKnown RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 FPGSQ05932 587 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 TAF12Q16514 161 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 PITRM1Q5JRX3 1037 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 CWF19L1Q69YN2 538 aaKnown RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 GK5Q6ZS86 529 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 NET1Q7Z628 596 aaPredicted RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 SPPL2BQ8TCT7 592 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 STYXQ8WUJ0 223 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 WBP2Q969T9 261 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 SLC39A13Q96H72 371 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 DNAJC1Q96KC8 554 aaKnown RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 ZYG11BQ9C0D3 744 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 EBF3Q9H4W6 596 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 FAM96AQ9H5X1 160 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 BPIFA1Q9NP55 256 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 IL23AQ9NPF7 189 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 ENTPD7Q9NQZ7 604 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 TREX1Q9NSU2 369 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 NDE1Q9NXR1 346 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 PCDHGA4Q9Y5G9 962 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 GBF1Q92538 1859 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 A0A1B0GTL3 188 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 C2orf78A6NCI8 922 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 ARHGEF15O94989 841 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 LMNAP02545 664 aaKnown RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 RGRP47804 291 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 AP2B1P63010 937 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 MRPS22P82650 360 aaKnown RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 SEMA3AQ14563 771 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 USP41Q3LFD5 358 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 SFT2D3Q587I9 215 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 NADSYN1Q6IA69 706 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 LINGO4Q6UY18 593 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 MYLK4Q86YV6 388 aaPredicted RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 DENND1CQ8IV53 801 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 DSELQ8IZU8 1212 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 TMEM169Q96HH4 297 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 MRPL9Q9BYD2 267 aaKnown RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 MMADHCQ9H3L0 296 aaPredicted RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 CERS4Q9HA82 394 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 IL1RL2Q9HB29 575 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 PCDHGB4Q9UN71 923 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 RAP2CQ9Y3L5 183 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 PCDHGB5Q9Y5G0 923 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 BRWD1Q9NSI6 2320 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 UBA6A0AVT1 1052 aaPredicted RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 TXNDC9O14530 226 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 TBC1D4O60343 1298 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 CACNG3O60359 315 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 FGBP02675 491 aa9.5□□□□□ -0.89
CUX1-206ENST00000437600 XRCC1P18887 633 aaPredicted RBP9.5□□□□□ -0.89
CUX1-206ENST00000437600 RENBPP51606 427 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms