RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 KIF1CO43896 1103 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 CEP104O60308 925 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 ERAL1O75616 437 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 BEST1O76090 585 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 ADH4P08319 380 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 HOXB7P09629 217 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 ENGP17813 658 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 TBXAS1P24557 533 aaPredicted RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 HOXA13P31271 388 aaPredicted RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 EIF2DP41214 584 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 CYP4A11Q02928 519 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 TMEM115Q12893 351 aaPredicted RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 CSTF3Q12996 717 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 LARS2Q15031 903 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 RPE65Q16518 533 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 RAB41Q5JT25 222 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 LY6G5CQ5SRR4 150 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 NAPEPLDQ6IQ20 393 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 RPUSD3Q6P087 351 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 KLHL35Q6PF15 583 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 IL20RBQ6UXL0 311 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 Q6ZNX1 250 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 GSTA5Q7RTV2 222 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 BCDIN3DQ7Z5W3 292 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 TADA2BQ86TJ2 420 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 C1orf210Q8IVY1 113 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 VPS52Q8N1B4 723 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 PAQR4Q8N4S7 273 aaPredicted RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 WDTC1Q8N5D0 677 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 CADM4Q8NFZ8 388 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 OR52N4Q8NGI2 321 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 IL17DQ8TAD2 202 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 C2CD4CQ8TF44 421 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 HSPH1Q92598 858 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 SGCDQ92629 289 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 PERPQ96FX8 193 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 ZBED3Q96IU2 234 aaPredicted RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 Q96MF0 132 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 HS6ST2Q96MM7 605 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 GPR78Q96P69 363 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 FYTTD1Q96QD9 318 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 TEFMQ96QE5 360 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 MMS19Q96T76 1030 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 YME1L1Q96TA2 773 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 H2AFJQ9BTM1 129 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 ZCCHC4Q9H5U6 513 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 PARD6AQ9NPB6 346 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 C20orf141Q9NUB4 165 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 RBM28Q9NW13 759 aaKnown RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 HYPKQ9NX55 129 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 MIS18AQ9NYP9 233 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 KIAA1456Q9P272 454 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 SUCLA2Q9P2R7 463 aaPredicted RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 THEGQ9P2T0 379 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 HDAC6Q9UBN7 1215 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 UPB1Q9UBR1 384 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 DBF4Q9UBU7 674 aaPredicted RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 HSPB7Q9UBY9 170 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 PCDHGB4Q9UN71 923 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 MTMR6Q9Y217 621 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 ZNF711Q9Y462 761 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 RPAP1Q9BWH6 1393 aaPredicted RBP4.27□□□□□ -1.73
HMGB3-203ENST00000430118 EMSYQ7Z589 1322 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 RAD50Q92878 1312 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 ARHGAP10A1A4S6 786 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 FRMD3A2A2Y4 597 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 LRRC53A6NM62 1247 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 VGLL3A8MV65 326 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 OR2C1O95371 312 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 SERPINC1P01008 464 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 PCCAP05165 728 aaPredicted RBP4.26□□□□□ -1.73
HMGB3-203ENST00000430118 APOA4P06727 396 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 GALTP07902 379 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 RFPL3SP0C7P2 107 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 HKR1P10072 659 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 PEPDP12955 493 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 TTKP33981 857 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 UBA7P41226 1012 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 GARSP41250 739 aaKnown RBP4.26□□□□□ -1.73
HMGB3-203ENST00000430118 SKIV2L2P42285 1042 aaKnown RBP4.26□□□□□ -1.73
HMGB3-203ENST00000430118 AVPR1BP47901 424 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 CTSWP56202 376 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 RIPK4P57078 832 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 YWHAZP63104 245 aaKnown RBP4.26□□□□□ -1.73
HMGB3-203ENST00000430118 SHC2P98077 582 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 GAB1Q13480 694 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 KCNB1Q14721 858 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 MFSD13AQ14CX5 517 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 RASA2Q15283 850 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 AP5B1Q2VPB7 878 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 ZNF667Q5HYK9 610 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 CTR9Q6PD62 1173 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 CASC1Q6TDU7 716 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 DCDC5Q6ZRR9 648 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 PRSS45Q7RTY3 260 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 MDGA2Q7Z553 956 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 TERB1Q8NA31 727 aa4.26□□□□□ -1.73
HMGB3-203ENST00000430118 WIPF2Q8TF74 440 aaPredicted RBP4.26□□□□□ -1.73
HMGB3-203ENST00000430118 TMEM170AQ8WVE7 144 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms