RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 FAM83BQ5T0W9 1011 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 CEACAM20Q6UY09 585 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 KCTD8Q6ZWB6 473 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 RNF113BQ8IZP6 322 aaKnown RBP4.56□□□□□ -1.68
LINC01040-201ENST00000425048 LYG1Q8N1E2 194 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 SCCPDHQ8NBX0 429 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 AGBL3Q8NEM8 1001 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 PPM1EQ8WY54 764 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 ZNF524Q96C55 264 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 ZNF570Q96NI8 536 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 PYGO2Q9BRQ0 406 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 KCNK7Q9Y2U2 307 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 DERAQ9Y315 318 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 CEP104O60308 925 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 SLC2A4P14672 509 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 CLCNKAP51800 687 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 TIGD6Q17RP2 521 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 CTXN3Q4LDR2 81 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 MOB3CQ70IA8 216 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 CACNA2D3Q8IZS8 1091 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 DSELQ8IZU8 1212 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 CNOT9Q92600 299 aaKnown RBP4.55□□□□□ -1.68
LINC01040-201ENST00000425048 ZNF599Q96NL3 588 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 PCGF6Q9BYE7 350 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 TMEM160Q9NX00 188 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 FAF1Q9UNN5 650 aaPredicted RBP4.55□□□□□ -1.68
LINC01040-201ENST00000425048 PRSS21Q9Y6M0 314 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 TAF1P21675 1872 aa4.55□□□□□ -1.68
LINC01040-201ENST00000425048 LOC105371045A0A1W2PR82 267 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 GOLGA6L9A6NEM1 432 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 STX16-NPEPL1H3BU86 382 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 STX16O14662 325 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 ANP32CO43423 234 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 KLK8O60259 260 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 ITGA2P17301 1181 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 S1PR1P21453 382 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 HOXA1P49639 335 aaPredicted RBP4.54□□□□□ -1.68
LINC01040-201ENST00000425048 RGMBQ6NW40 437 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 SLC27A1Q6PCB7 646 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 SRBD1Q8N5C6 995 aaKnown RBP4.54□□□□□ -1.68
LINC01040-201ENST00000425048 KLHDC9Q8NEP7 349 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 RAB40AQ8WXH6 277 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 SLC32A1Q9H598 525 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 TINAGQ9UJW2 476 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 RCOR1Q9UKL0 485 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 AMDHD2Q9Y303 409 aa4.54□□□□□ -1.68
LINC01040-201ENST00000425048 BLOC1S5-TXNDC5H3BN57 136 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 IPO5O00410 1097 aaKnown RBP4.53□□□□□ -1.68
LINC01040-201ENST00000425048 FAM155BO75949 473 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 INHBAP08476 426 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 IFIT2P09913 472 aaKnown RBP4.53□□□□□ -1.68
LINC01040-201ENST00000425048 WEE2P0C1S8 567 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 ZNF10P21506 573 aaPredicted RBP4.53□□□□□ -1.68
LINC01040-201ENST00000425048 BLMHQ13867 455 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 KRT24Q2M2I5 525 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 GPATCH4Q5T3I0 446 aaKnown RBP4.53□□□□□ -1.68
LINC01040-201ENST00000425048 HERC6Q8IVU3 1022 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 FOXRED2Q8IWF2 684 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 KIAA2013Q8IYS2 634 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 ZNF34Q8IZ26 560 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 C1orf87Q8N0U7 546 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 TWNKQ96RR1 684 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 CLSTN3Q9BQT9 956 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 MXRA8Q9BRK3 442 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 HAUS8Q9BT25 410 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 CRB3Q9BUF7 120 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 LMAN2LQ9H0V9 348 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 HCFC1R1Q9NWW0 138 aa4.53□□□□□ -1.68
LINC01040-201ENST00000425048 PATE4P0C8F1 98 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 RRM1P23921 792 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 RAD23BP54727 409 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 EEF1A1P68104 462 aaKnown RBP4.52□□□□□ -1.69
LINC01040-201ENST00000425048 MMEL1Q495T6 779 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 CCDC38Q502W7 563 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 EEF1A1P5Q5VTE0 462 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 SLC36A4Q6YBV0 504 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 TAOK1Q7L7X3 1001 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 TMEM57Q8N5G2 664 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 DUSP19Q8WTR2 217 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 THAP4Q8WY91 577 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 LTV1Q96GA3 475 aaPredicted RBP4.52□□□□□ -1.69
LINC01040-201ENST00000425048 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.52□□□□□ -1.69
LINC01040-201ENST00000425048 GDAQ9Y2T3 454 aa4.52□□□□□ -1.69
LINC01040-201ENST00000425048 MMP14P50281 582 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 CLDN2P57739 230 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 PDE1BQ01064 536 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 TBL3Q12788 808 aaKnown RBP4.51□□□□□ -1.69
LINC01040-201ENST00000425048 C17orf99Q6UX52 265 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 TOGARAM2Q6ZUX3 1019 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 GTSCR1Q86UQ5 136 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 HCAR2Q8TDS4 363 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 DCTN5Q9BTE1 182 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 FSD1Q9BTV5 496 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 CARD8Q9Y2G2 431 aa4.51□□□□□ -1.69
LINC01040-201ENST00000425048 ABHD14A-ACY1A0A1B0GW23 586 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 PABPN1LA6NDY0 278 aaKnown RBP4.5□□□□□ -1.69
LINC01040-201ENST00000425048 PRC1O43663 620 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 WDR1O75083 606 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 TK1P04183 234 aa4.5□□□□□ -1.69
LINC01040-201ENST00000425048 ETFAP13804 333 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms