RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NPHS1O60500 1241 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 SH3BGRP55822 239 aaPredicted RBP21.03■□□□□ 0.96
CTCF-202ENST00000401394 RAB39AQ14964 217 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 NOL9Q5SY16 702 aaKnown RBP21.03■□□□□ 0.96
CTCF-202ENST00000401394 LARP4Q71RC2 724 aaKnown RBP eCLIP21.03■□□□□ 0.96
CTCF-202ENST00000401394 BHLHA9Q7RTU4 235 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 ZNF554Q86TJ5 538 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 BBS5Q8N3I7 341 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 MRGPRX2Q96LB1 330 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 SLC38A7Q9NVC3 462 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 IPO11Q9UI26 975 aaKnown RBP21.03■□□□□ 0.96
CTCF-202ENST00000401394 DHRS12A0PJE2 317 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 SMPD1P17405 629 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 ITKQ08881 620 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 MERTKQ12866 999 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 NOTUMQ6P988 496 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 PBXIP1Q96AQ6 731 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 TCF12Q99081 682 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 RPF2Q9H7B2 306 aaKnown RBP21.03■□□□□ 0.96
CTCF-202ENST00000401394 CNOT11Q9UKZ1 510 aaKnown RBP21.03■□□□□ 0.96
CTCF-202ENST00000401394 PIP5K1BO14986 540 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 GPX3P22352 226 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 GNA12Q03113 381 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 DCAF4L1Q3SXM0 396 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 PDZD4Q76G19 769 aaPredicted RBP21.03■□□□□ 0.96
CTCF-202ENST00000401394 TFAP2DQ7Z6R9 452 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 C2CD4AQ8NCU7 369 aaPredicted RBP21.03■□□□□ 0.96
CTCF-202ENST00000401394 HDAC10Q969S8 669 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 TUBB1Q9H4B7 451 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 TRHDEQ9UKU6 1024 aa21.03■□□□□ 0.96
CTCF-202ENST00000401394 ZFC3H1O60293 1989 aaKnown RBP21.02■□□□□ 0.96
CTCF-202ENST00000401394 FXYD1O00168 92 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 PTGESO14684 152 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 PCNAP12004 261 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 SAMD4BQ5PRF9 694 aaKnown RBP21.02■□□□□ 0.96
CTCF-202ENST00000401394 PPHLN1Q8NEY8 458 aaKnown RBP21.02■□□□□ 0.96
CTCF-202ENST00000401394 C19orf60Q96EN9 201 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 TMEM209Q96SK2 561 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 HBEGFQ99075 208 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 GLOD4Q9HC38 313 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 GPRC5DQ9NZD1 345 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 SLC8A2Q9UPR5 921 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 A0A0G2JMZ2 1700 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 LRRC37A2A6NM11 1700 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 SLC22A2O15244 555 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 FAM163BP0C2L3 166 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 PRDX3P30048 256 aaKnown RBP21.02■□□□□ 0.96
CTCF-202ENST00000401394 ADSLP30566 484 aaPredicted RBP21.02■□□□□ 0.96
CTCF-202ENST00000401394 SCNN1AP37088 669 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 MLLT10P55197 1068 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 CCNA1P78396 465 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 CYP51A1Q16850 503 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 UNC50Q53HI1 259 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 NANOGP8Q6NSW7 305 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 ZC3H7AQ8IWR0 971 aaKnown RBP21.02■□□□□ 0.96
CTCF-202ENST00000401394 ATPAF2Q8N5M1 289 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 SMYD1Q8NB12 490 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 THAP11Q96EK4 314 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 PADI4Q9UM07 663 aa21.02■□□□□ 0.96
CTCF-202ENST00000401394 UBXN8O00124 270 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 MAFKO60675 156 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 MATN1P21941 496 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 PFKPQ01813 784 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 HECTD2Q5U5R9 776 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 C14orf80Q86SX3 495 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 SLC25A23Q9BV35 468 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 MID1IP1Q9NPA3 183 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 GDAP2Q9NXN4 497 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 IPPQ9Y573 584 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 NCF1BA6NI72 391 aaPredicted RBP21.01■□□□□ 0.95
CTCF-202ENST00000401394 NCF1CA8MVU1 366 aaPredicted RBP21.01■□□□□ 0.95
CTCF-202ENST00000401394 AXIN1O15169 862 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 ACOX3O15254 700 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 BAIAP3O94812 1187 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 NCF1P14598 390 aaPredicted RBP21.01■□□□□ 0.95
CTCF-202ENST00000401394 PFKFB4Q16877 469 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 UBXN11Q5T124 520 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 KCTD8Q6ZWB6 473 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 BTLAQ7Z6A9 289 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 PPTC7Q8NI37 304 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 TRPC4APQ8TEL6 797 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 INIPQ9NRY2 104 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 TREX1Q9NSU2 369 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 TSR3Q9UJK0 312 aaKnown RBP21.01■□□□□ 0.95
CTCF-202ENST00000401394 GMEB1Q9Y692 573 aa21.01■□□□□ 0.95
CTCF-202ENST00000401394 A0A0G2JLL6 359 aaPredicted RBP21■□□□□ 0.95
CTCF-202ENST00000401394 CASTOR2A6NHX0 329 aa21■□□□□ 0.95
CTCF-202ENST00000401394 CLOCKO15516 846 aa21■□□□□ 0.95
CTCF-202ENST00000401394 IMPDH2P12268 514 aa21■□□□□ 0.95
CTCF-202ENST00000401394 C8orf82Q6P1X6 216 aaPredicted RBP21■□□□□ 0.95
CTCF-202ENST00000401394 PRRT2Q7Z6L0 340 aaPredicted RBP21■□□□□ 0.95
CTCF-202ENST00000401394 ISCA2Q86U28 154 aa21■□□□□ 0.95
CTCF-202ENST00000401394 THEGQ9P2T0 379 aa21■□□□□ 0.95
CTCF-202ENST00000401394 SARDHQ9UL12 918 aa21■□□□□ 0.95
CTCF-202ENST00000401394 NEU3Q9UQ49 428 aa21■□□□□ 0.95
CTCF-202ENST00000401394 SH3PXD2BA1X283 911 aa21■□□□□ 0.95
CTCF-202ENST00000401394 ERI2A8K979 691 aaKnown RBP21■□□□□ 0.95
CTCF-202ENST00000401394 ARPC2O15144 300 aa21■□□□□ 0.95
CTCF-202ENST00000401394 ZBTB11O95625 1053 aaPredicted RBP21■□□□□ 0.95
CTCF-202ENST00000401394 UGT1A1P22309 533 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms