RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 BEST1O76090 585 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 MT-CYBP00156 380 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-203ENST00000374877 HOXA11P31270 313 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-203ENST00000374877 SOX11P35716 441 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 STX1BP61266 288 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 FAM83EQ2M2I3 478 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 C9orf57Q5W0N0 161 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 PPP1R13LQ8WUF5 828 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 KIFC1Q9BW19 673 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 POLR1BQ9H9Y6 1135 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 SLC2A6Q9UGQ3 507 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 C9JVG2 144 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 BMP2P12643 396 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 SLC1A2P43004 574 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 CD97P48960 835 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 KPNA2P52292 529 aaKnown RBP11.13□□□□□ -0.63
CCDC40-203ENST00000374877 MGAT3Q09327 533 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 MERTKQ12866 999 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 SEPT6Q14141 434 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 TMEM26Q6ZUK4 368 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 CRYBG2Q8N1P7 616 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 LRRC52Q8N7C0 313 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 FBXL20Q96IG2 436 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 TEKT5Q96M29 485 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 TSPAN18Q96SJ8 248 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 PLEKHA5Q9HAU0 1116 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 EML4Q9HC35 981 aaKnown RBP11.13□□□□□ -0.63
CCDC40-203ENST00000374877 SARDHQ9UL12 918 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 DHRS12A0PJE2 317 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 I6L893 689 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-203ENST00000374877 NR5A2O00482 541 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 SPTLC1O15269 473 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 NCAM2O15394 837 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 MTSS1O43312 755 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 AKAP5P24588 427 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 PMS2P3Q13401 168 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 NEDD8Q15843 81 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 FGD3Q5JSP0 725 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 FAM26DQ5JW98 314 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 PKN3Q6P5Z2 889 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 LYSMD3Q7Z3D4 306 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 APPL2Q8NEU8 664 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 LRCH3Q96II8 777 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 FAR2Q96K12 515 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 MED10Q9BTT4 135 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 EIF2AQ9BY44 585 aaKnown RBP11.13□□□□□ -0.63
CCDC40-203ENST00000374877 MEAF6Q9HAF1 191 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 PFDN4Q9NQP4 134 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 PAK6Q9NQU5 681 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-203ENST00000374877 KLK14Q9P0G3 267 aa11.13□□□□□ -0.63
CCDC40-203ENST00000374877 H3BMQ9 156 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 AURKAO14965 403 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 CBFA2T3O75081 653 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 IL10P22301 178 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 CD151P48509 253 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 C21orf59P57076 290 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 PCID2Q5JVF3 399 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 RBM20Q5T481 1227 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 C16orf87Q6PH81 154 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 CTU1Q7Z7A3 348 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 EPHX4Q8IUS5 362 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 HDAC11Q96DB2 347 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 COG8Q96MW5 612 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 NPLQ9BXD5 320 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 ATXN3LQ9H3M9 355 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 RPF2Q9H7B2 306 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 GOLGA2P5Q9HBQ8 144 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 DDIT4Q9NX09 232 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 TUBA8Q9NY65 449 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 DERAQ9Y315 318 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 MRPL42Q9Y6G3 142 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 A8MT66 165 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 CLOCKO15516 846 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 XPOTO43592 962 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 IPO13O94829 963 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 RPL34P49207 117 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 TKTL1P51854 596 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 BNIP3Q12983 259 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 ATP1A4Q13733 1029 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 INPP5AQ14642 412 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 AARS2Q5JTZ9 985 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 FAM45BPQ6NSW5 357 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 CHST15Q7LFX5 561 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 LINC00523Q86TU6 105 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 PNPLA1Q8N8W4 532 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 PCYOX1LQ8NBM8 494 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 DDHD1Q8NEL9 900 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 FAM45AQ8TCE6 357 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 TMEM40Q8WWA1 233 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 BORCS5Q969J3 196 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 DUS3LQ96G46 650 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 SNX27Q96L92 541 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 FICDQ9BVA6 458 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 NAA50Q9GZZ1 169 aaKnown RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 MUC3BQ9H195 1237 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 MRGBPQ9NV56 204 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 OAZ3Q9UMX2 235 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 MTF2Q9Y483 593 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-203ENST00000374877 FRMPD3Q5JV73 1810 aa11.12□□□□□ -0.63
CCDC40-203ENST00000374877 DLGAP1O14490 977 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms