RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 HELTA6NFD8 242 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SOBPA7XYQ1 873 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 PRRG1O14668 218 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ANKRD28O15084 1053 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 IL33O95760 270 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 YES1P07947 543 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CCND2P30279 289 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SDC2P34741 201 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ETV3P41162 512 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 MAP3K8P41279 467 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ALDH3B2P48448 385 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 KLF10Q13118 480 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CLEC17AQ6ZS10 378 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM58AQ8N1B3 248 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 EIF1ADQ8N9N8 165 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 ZBTB38Q8NAP3 1195 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM131CQ96AQ9 280 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CITED1Q99966 193 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 DPYSL5Q9BPU6 564 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 C19orf44Q9H6X5 657 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CNTD2Q9H8S5 307 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 TMEM184CQ9NVA4 438 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC5A4Q9NY91 659 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CCDC167Q9P0B6 97 aa7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 CHORDC1Q9UHD1 332 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-201ENST00000313860 A0A087WXM4 84 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 TGFB3P10600 412 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 FXR2P51116 673 aaKnown RBP eCLIP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 OR2B6P58173 313 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 IFI35P80217 286 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 BDH1Q02338 343 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 PPP3CAQ08209 521 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 GRAPQ13588 217 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 AOC3Q16853 763 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC36A4Q6YBV0 504 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 QSOX2Q6ZRP7 698 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 LDHDQ86WU2 507 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF677Q86XU0 584 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 STK40Q8N2I9 435 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 FNDC5Q8NAU1 212 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 RPLP0P6Q8NHW5 317 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 GRAPLQ8TC17 118 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 RAD51AP1Q96B01 352 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ZFP3Q96NJ6 502 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 SORCS2Q96PQ0 1159 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 GPA33Q99795 319 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF559Q9BR84 538 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 CENPOQ9BU64 300 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 TMEM185BQ9H7F4 350 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 RPS10P5Q9NQ39 176 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 MIEF1Q9NQG6 463 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 IKZF3Q9UKT9 509 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 PCDHGA7Q9Y5G6 932 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 TAF6LQ9Y6J9 622 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ITIH6Q6UXX5 1313 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ARGFXA6NJG6 315 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ATP6V1G2-DDX39BF2Z307 99 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 MPZL2O60487 215 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 CLPXO76031 633 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 FADS2O95864 444 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ARAFP10398 606 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 IFNGR2P38484 337 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 LBX1P52954 281 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 RAB15P59190 212 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ERVFC1-1P60608 527 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 RIN1Q13671 783 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 TAZQ16635 292 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 LRRC37A5PQ49AS3 106 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 MROH9Q5TGP6 573 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 RETSATQ6NUM9 610 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 AGMOQ6ZNB7 445 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 METTL16Q86W50 562 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 RALGPS2Q86X27 583 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC35F3Q8IY50 421 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 TTLL6Q8N841 843 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ANKS1AQ92625 1134 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 KCNN2Q9H2S1 579 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 NANSQ9NR45 359 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 SEPT9Q9UHD8 586 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 SAMD4AQ9UPU9 718 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ERGIC3Q9Y282 383 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 PCDHGB3Q9Y5G1 929 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 FADS3Q9Y5Q0 445 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ANKRD30BLA7E2S9 258 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 HIRAP54198 1017 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 CDC42P60953 191 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 MXD1Q05195 221 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 MAP2K5Q13163 448 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 IZUMO3Q5VZ72 239 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF746Q6NUN9 644 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 TDRD5Q8NAT2 981 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 CLIP3Q96DZ5 547 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 KCNIP2Q9NS61 270 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 SMPD4Q9NXE4 827 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 BFARQ9NZS9 450 aa7.65□□□□□ -1.18
LIMCH1-201ENST00000313860 CD3EAPO15446 510 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 SEC14L5O43304 696 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 ITPKAP23677 461 aa7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 ADD1P35611 737 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-201ENST00000313860 CASP9P55211 416 aa7.65□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms