RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 KRT75O95678 551 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 MLNP12872 115 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 SPNP16150 400 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 ITGB6P18564 788 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 CAPN3P20807 821 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 ADSLP30566 484 aaPredicted RBP13.53□□□□□ -0.24
SKA3-201ENST00000298260 ARL2P36404 184 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 ARL1P40616 181 aaPredicted RBP13.53□□□□□ -0.24
SKA3-201ENST00000298260 PLA2G4EQ3MJ16 856 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 SPANXN3Q5MJ09 141 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 UGT3A1Q6NUS8 523 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 ABHD15Q6UXT9 468 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 PLEKHG7Q6ZR37 379 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 ANKRD13AQ8IZ07 590 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 SLC22A15Q8IZD6 547 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 RNF149Q8NC42 400 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 TOP1MTQ969P6 601 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 TSNARE1Q96NA8 513 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 LRRC40Q9H9A6 602 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 GBA2Q9HCG7 927 aaPredicted RBP13.53□□□□□ -0.24
SKA3-201ENST00000298260 HMG20AQ9NP66 347 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 TMEM9Q9P0T7 183 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 CPSF3Q9UKF6 684 aaKnown RBP13.53□□□□□ -0.24
SKA3-201ENST00000298260 BOLA1Q9Y3E2 137 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 PMF1-BGLAPU3KQ54 211 aa13.53□□□□□ -0.24
SKA3-201ENST00000298260 TNPO2O14787 897 aaKnown RBP13.52□□□□□ -0.24
SKA3-201ENST00000298260 HUS1O60921 280 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 ENO2P09104 434 aaPredicted RBP13.52□□□□□ -0.24
SKA3-201ENST00000298260 HMGB2P26583 209 aaKnown RBP13.52□□□□□ -0.24
SKA3-201ENST00000298260 NEK2P51955 445 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 CDH13P55290 713 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 COPZ1P61923 177 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 CCNA1P78396 465 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 CSHL1Q14406 222 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 AMHR2Q16671 573 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 SOWAHAQ2M3V2 549 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 UGT3A2Q3SY77 523 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 XKR3Q5GH77 459 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 BROXQ5VW32 411 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 ARHGAP17Q68EM7 881 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 TAS2R42Q7RTR8 314 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 SPRED1Q7Z699 444 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 ACOT1Q86TX2 421 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 ZC3HC1Q86WB0 502 aaKnown RBP13.52□□□□□ -0.24
SKA3-201ENST00000298260 SFRP1Q8N474 314 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 DUS3LQ96G46 650 aaKnown RBP13.52□□□□□ -0.24
SKA3-201ENST00000298260 TSPAN18Q96SJ8 248 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 GDAP2Q9NXN4 497 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 SLAMF8Q9P0V8 285 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 SARDHQ9UL12 918 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 VWA7Q9Y334 891 aa13.52□□□□□ -0.24
SKA3-201ENST00000298260 H0YCG3 227 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 H3BMM5 538 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 OGTO15294 1046 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 PIGRP01833 764 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 ALBP02768 609 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 LCP1P13796 627 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 ARPC4P59998 168 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 RACK1P63244 317 aaKnown RBP13.52□□□□□ -0.25
SKA3-201ENST00000298260 ADARB1P78563 741 aaKnown RBP13.52□□□□□ -0.25
SKA3-201ENST00000298260 TRIM32Q13049 653 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 SQLEQ14534 574 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 LRIT3Q3SXY7 679 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 FBXO48Q5FWF7 155 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 STRIP1Q5VSL9 837 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 PRAMEF18Q5VWM3 479 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 VSIG10LQ86VR7 867 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 C7orf31Q8N865 590 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 HEXDCQ8WVB3 486 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 VPS33AQ96AX1 596 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 RNF145Q96MT1 663 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 GPR78Q96P69 363 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 GPN2Q9H9Y4 310 aaPredicted RBP13.52□□□□□ -0.25
SKA3-201ENST00000298260 ADAM28Q9UKQ2 775 aa13.52□□□□□ -0.25
SKA3-201ENST00000298260 A0A0J9YYE9 177 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 NFKBIEO00221 500 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 UBFD1O14562 309 aaKnown RBP13.51□□□□□ -0.25
SKA3-201ENST00000298260 NOBOXO60393 691 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 DGCR6Q14129 220 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 INPP5AQ14642 412 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 SURF1Q15526 300 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 CTF1Q16619 201 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 DLK2Q6UY11 383 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 SPATC1Q76KD6 591 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 MFSD4AQ8N468 514 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 EXT2Q93063 718 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 HDAC11Q96DB2 347 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 MYRFLQ96LU7 910 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 SLC30A3Q99726 388 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 SLC25A23Q9BV35 468 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 HOXD1Q9GZZ0 328 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 BFARQ9NZS9 450 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 TBC1D14Q9P2M4 693 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 TRPC5OSA6NMA1 111 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 H2AFYO75367 372 aaKnown RBP13.51□□□□□ -0.25
SKA3-201ENST00000298260 GFAPP14136 432 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 LEPRP48357 1165 aaKnown RBP13.51□□□□□ -0.25
SKA3-201ENST00000298260 ARCN1P48444 511 aaKnown RBP13.51□□□□□ -0.25
SKA3-201ENST00000298260 CXCL9Q07325 125 aa13.51□□□□□ -0.25
SKA3-201ENST00000298260 PPIL2Q13356 520 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms