RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TBC1D30Q9Y2I9 924 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 CCNE2O96020 404 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ERBB2P04626 1255 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 THRBP10828 461 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 GTF2A2P52657 109 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 IL2P60568 153 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 PSME3P61289 254 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 GRIK4Q16099 956 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SULT1C3Q6IMI6 304 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SLC27A1Q6PCB7 646 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 PLET1Q6UQ28 207 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ZNF615Q8N8J6 731 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 CDYL2Q8N8U2 506 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TMEM159Q96B96 161 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ZBTB45Q96K62 511 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TCF12Q99081 682 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 NOCTQ9UK39 431 aaKnown RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TDRKHQ9Y2W6 561 aaKnown RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 A0A087WZ62 844 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 BANF1O75531 89 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 C9P02748 559 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 DLG1Q12959 904 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ZNF613Q6PF04 617 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 RDH11Q8TC12 318 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 FDXACB1Q9BRP7 624 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 IL22Q9GZX6 179 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TMCO1Q9UM00 188 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 PCDHA2Q9Y5H9 948 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SCN2AQ99250 2005 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 FAM237BA0A1B0GVD1 139 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ACAT1P24752 427 aaKnown RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 NAA20P61599 178 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 MTA1Q13330 715 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 CYP1B1Q16678 543 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 GRPEL2Q8TAA5 225 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 KLK14Q9P0G3 267 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ST3GAL5Q9UNP4 418 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 RTTNQ86VV8 2226 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SPATA31C2B4DYI2 1134 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 DHFRP00374 187 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 ITGA2P17301 1181 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 AXLP30530 894 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 RENBPP51606 427 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 SLC25A3Q00325 362 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 RNASE12Q5GAN4 147 aaKnown RBP9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TUBA3EQ6PEY2 450 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TNFSF13BQ9Y275 285 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 AP4B1Q9Y6B7 739 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 NWD2Q9ULI1 1742 aa9.89□□□□□ -0.83
COL6A3-201ENST00000295550 TEX46H3BTG2 121 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 INSRRP14616 1297 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ITGB5P18084 799 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 RPL22P35268 128 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 CRY1Q16526 586 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 PYHIN1Q6K0P9 492 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 GLT6D1Q7Z4J2 308 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 UNC93AQ86WB7 457 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 NAT14Q8WUY8 206 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 HGH1Q9BTY7 390 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 CEP41Q9BYV8 373 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 SLC6A15Q9H2J7 730 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 APOC1P02654 83 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 RPL9P32969 192 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 PTGIRP43119 386 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 GABRB2P47870 512 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 HIRAP54198 1017 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 RPL7AP62424 266 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 MYBPC1Q00872 1141 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 BNIP2Q12982 314 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 PTCD3Q96EY7 689 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ZFYVE28Q9HCC9 887 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 TMEM59LQ9UK28 342 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 RBL1P28749 1068 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 NUMBP49757 651 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 TUBA3CQ13748 450 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 LY6KQ17RY6 165 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 CES3Q6UWW8 571 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 HERC6Q8IVU3 1022 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 TAMM41Q96BW9 452 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ARHGEF17Q96PE2 2063 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ZCCHC2Q9C0B9 1178 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 LHX5Q9H2C1 402 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 CIDEBQ9UHD4 219 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 GNB5O14775 395 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ERN1O75460 977 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 METTL18O95568 372 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 CDH4P55283 916 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 SKP1P63208 163 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 MSANTD1Q6ZTZ1 278 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 PALB2Q86YC2 1186 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 TDRPQ86YL5 185 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 OPTCQ9UBM4 332 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 IRGMA1A4Y4 181 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ENDOD1O94919 500 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 CALCAP01258 141 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 LRG1P02750 347 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 SEPHS1P49903 392 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 ACO2Q99798 780 aaKnown RBP9.88□□□□□ -0.83
COL6A3-201ENST00000295550 SLC4A5Q9BY07 1137 aa9.88□□□□□ -0.83
COL6A3-201ENST00000295550 POPDC2Q9HBU9 364 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms