RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PTP4A2Q12974 167 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 ARHGEF7Q14155 803 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 AGERQ15109 404 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 DPCR1Q3MIW9 517 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 PARP15Q460N3 678 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 EFHC2Q5JST6 749 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 PHF19Q5T6S3 580 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 WDR59Q6PJI9 974 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 OGFOD3Q6PK18 319 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 ATG14Q6ZNE5 492 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 TMPRSS9Q7Z410 1059 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 SPRED1Q7Z699 444 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 ZSWIM9Q86XI8 627 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 ZSCAN1Q8NBB4 408 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 OR56A4Q8NGH8 313 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 FUBP1Q96AE4 644 aaKnown RBP19.52■□□□□ 0.72
CLN3-262ENST00000637699 TMEM159Q96B96 161 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 CMKLR1Q99788 373 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 SELENOOQ9BVL4 669 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 DPEP2Q9H4A9 486 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 FGF22Q9HCT0 170 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 SAMSN1Q9NSI8 373 aaKnown RBP19.52■□□□□ 0.72
CLN3-262ENST00000637699 ATP8A1Q9Y2Q0 1164 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 PCDHB11Q9Y5F2 797 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 PCDHGA4Q9Y5G9 962 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 ANKRD36A6QL64 1941 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 CACNB4O00305 520 aaPredicted RBP19.51■□□□□ 0.71
CLN3-262ENST00000637699 WT1P19544 449 aaPredicted RBP19.51■□□□□ 0.71
CLN3-262ENST00000637699 MMP12P39900 470 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 GRM3Q14832 879 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 TBR1Q16650 682 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 C14orf28Q4W4Y0 310 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 BRAT1Q6PJG6 821 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 ZNF641Q96N77 438 aaPredicted RBP19.51■□□□□ 0.71
CLN3-262ENST00000637699 TMEM168Q9H0V1 697 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 GANQ9H2C0 597 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 SEMA6CQ9H3T2 930 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 CATSPERBQ9H7T0 1116 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 CHMP5Q9NZZ3 219 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 ADAM22Q9P0K1 906 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 MOSPD1Q9UJG1 213 aa19.51■□□□□ 0.71
CLN3-262ENST00000637699 UBR5O95071 2799 aaPredicted RBP19.51■□□□□ 0.71
CLN3-262ENST00000637699 C9orf172C9J069 976 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 J3KR12 359 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 TERTO14746 1132 aaKnown RBP19.5■□□□□ 0.71
CLN3-262ENST00000637699 RECQL5O94762 991 aaPredicted RBP19.5■□□□□ 0.71
CLN3-262ENST00000637699 UNGP13051 313 aaPredicted RBP19.5■□□□□ 0.71
CLN3-262ENST00000637699 PNLIPP16233 465 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 NSFP46459 744 aaKnown RBP19.5■□□□□ 0.71
CLN3-262ENST00000637699 KLK7P49862 253 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 UBE2HP62256 183 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 HLTFQ14527 1009 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLN3-262ENST00000637699 SPECC1LQ69YQ0 1117 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 TRIM72Q6ZMU5 477 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 UMODL1-AS1Q8N2C9 162 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 CCL4L1Q8NHW4 92 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 PCDHB18PQ96TA0 734 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 CYP4F12Q9HCS2 524 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 NLRC4Q9NPP4 1024 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 TAB2Q9NYJ8 693 aa19.5■□□□□ 0.71
CLN3-262ENST00000637699 BSNQ9UPA5 3926 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 WASH4PA8MWX3 477 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 CCP110O43303 1012 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 SUV39H1O43463 412 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 SFTPCP11686 197 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 KELP23276 732 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 ERCC5P28715 1186 aaPredicted RBP19.49■□□□□ 0.71
CLN3-262ENST00000637699 SOX5P35711 763 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 RGRP47804 291 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 KIAA1024LP59773 190 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 POLR2FP61218 127 aaKnown RBP19.49■□□□□ 0.71
CLN3-262ENST00000637699 AMZ1Q400G9 498 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 MAP9Q49MG5 647 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 TCP11X2Q5H9J9 407 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 DTX1Q86Y01 620 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 SLITRK4Q8IW52 837 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 PAF1Q8N7H5 531 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 JPH3Q8WXH2 748 aaPredicted RBP19.49■□□□□ 0.71
CLN3-262ENST00000637699 PDFQ9HBH1 243 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 RDH14Q9HBH5 336 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 FAM207AQ9NSI2 230 aaPredicted RBP19.49■□□□□ 0.71
CLN3-262ENST00000637699 FZD10Q9ULW2 581 aa19.49■□□□□ 0.71
CLN3-262ENST00000637699 PTPN13Q12923 2485 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 A0A1W2PQC6 194 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 A8MX80 341 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 B4GAT1O43505 415 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 NUDT21O43809 227 aaKnown RBP19.48■□□□□ 0.71
CLN3-262ENST00000637699 B4GALNT1Q00973 533 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 RALGDSQ12967 914 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 C16orf72Q14CZ0 275 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 SRLQ86TD4 932 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 TSEN2Q8NCE0 465 aaKnown RBP19.48■□□□□ 0.71
CLN3-262ENST00000637699 HTR3CQ8WXA8 447 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 CELF6Q96J87 481 aaKnown RBP19.48■□□□□ 0.71
CLN3-262ENST00000637699 TUBGCP5Q96RT8 1024 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 SEMA3CQ99985 751 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 LGR4Q9BXB1 951 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 ATP13A3Q9H7F0 1226 aa19.48■□□□□ 0.71
CLN3-262ENST00000637699 SUDS3Q9H7L9 328 aaPredicted RBP19.48■□□□□ 0.71
CLN3-262ENST00000637699 CFAP69A5D8W1 941 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms