RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CHRNA4P43681 627 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 EPHB1P54762 984 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 NHLH1Q02575 133 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 RALGDSQ12967 914 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 OLIG2Q13516 323 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 SLC1A5Q15758 541 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 ERAP2Q6P179 960 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 C11orf74Q86VG3 221 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 MNS1Q8NEH6 495 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 CCHCR1Q8TD31 782 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 SMIM14Q96QK8 99 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 TBL1YQ9BQ87 522 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 GPR174Q9BXC1 333 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 PCED1AQ9H1Q7 454 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 B4GALT6Q9UBX8 382 aa19.8■□□□□ 0.76
UPF3A-211ENST00000618700 NPIPB15A6NHN6 443 aaPredicted RBP19.79■□□□□ 0.76
UPF3A-211ENST00000618700 TSPAN6O43657 245 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 AGTP01019 485 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 FGF1P05230 155 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 ALPIP09923 528 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 CTPS1P17812 591 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 LHCGRP22888 699 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 PPP2CBP62714 309 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 PPP2CAP67775 309 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 BASP1P80723 227 aaKnown RBP19.79■□□□□ 0.76
UPF3A-211ENST00000618700 PTPRRQ15256 657 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 TMEM52BQ4KMG9 183 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 SIRPB2Q5JXA9 342 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 DENND5AQ6IQ26 1287 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 NEK5Q6P3R8 708 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 NDUFAF2Q8N183 169 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 CEP112Q8N8E3 955 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 TRIM51Q9BSJ1 452 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 C6orf106Q9H6K1 298 aaPredicted RBP19.79■□□□□ 0.76
UPF3A-211ENST00000618700 ARNT2Q9HBZ2 717 aa19.79■□□□□ 0.76
UPF3A-211ENST00000618700 CTAGE15A4D2H0 777 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 FAM187AA6NFU0 413 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 RAD51CO43502 376 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 USP12O75317 370 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 APRTP07741 180 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 CTAGE8P0CG41 777 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 TPSB2P20231 275 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 NFKBIAP25963 317 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 IVDP26440 423 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 VIPR1P32241 457 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 HNF1BP35680 557 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 TNNT3P45378 269 aaPredicted RBP19.78■□□□□ 0.76
UPF3A-211ENST00000618700 RPL6Q02878 288 aaKnown RBP19.78■□□□□ 0.76
UPF3A-211ENST00000618700 SPARCL1Q14515 664 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 KCNJ11Q14654 390 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 TPSAB1Q15661 275 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 TMEM259Q4ZIN3 620 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 SYCP2LQ5T4T6 812 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 NAPEPLDQ6IQ20 393 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 KIAA1161Q6NSJ0 714 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 MAATS1Q7Z4T9 603 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 CTAGE6Q86UF2 777 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 TRIM69Q86WT6 500 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 CTAGE4Q8IX94 777 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 CADM4Q8NFZ8 388 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 LRRC45Q96CN5 670 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 RMDN1Q96DB5 314 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 FAM122AQ96E09 287 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 APOL2Q9BQE5 337 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 IRF2BPLQ9H1B7 796 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 ASIC3Q9UHC3 531 aa19.78■□□□□ 0.76
UPF3A-211ENST00000618700 ZFR2Q9UPR6 939 aaKnown RBP19.78■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3DA0A087WVF3 549 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3IA0A087WXS9 549 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3EA0A087X179 549 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3KA0A087X1G2 549 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3FA6NER0 549 aaPredicted RBP19.77■□□□□ 0.76
UPF3A-211ENST00000618700 FAM47DPA6NHR8 397 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3LB9A6J9 549 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 E7EVH7 732 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 NEMP1O14524 444 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 LATO43561 262 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 RNGTTO60942 597 aaKnown RBP19.77■□□□□ 0.76
UPF3A-211ENST00000618700 NDUFS2O75306 463 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 IGHV4-34P06331 123 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3HP0C7X1 549 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 CCR5P51681 352 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 FAM193AP78312 1265 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 CDK16Q00536 496 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 SEMG2Q02383 582 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 CDKN3Q16667 212 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 PLK5Q496M5 336 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 SPDYCQ5MJ68 293 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 DNTTIP2Q5QJE6 756 aaKnown RBP19.77■□□□□ 0.76
UPF3A-211ENST00000618700 PMS2CLQ68D20 193 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 KIAA0895LQ68EN5 471 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3GQ6DHY5 549 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3CQ6IPX1 549 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 CCDC70Q6NSX1 233 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 ZC3H14Q6PJT7 736 aaKnown RBP19.77■□□□□ 0.76
UPF3A-211ENST00000618700 CRTC1Q6UUV9 634 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 HORMAD1Q86X24 394 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 TBC1D3Q8IZP1 549 aaPredicted RBP19.77■□□□□ 0.76
UPF3A-211ENST00000618700 MMGT1Q8N4V1 131 aa19.77■□□□□ 0.76
UPF3A-211ENST00000618700 SLC25A41Q8N5S1 370 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms