RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 MBL2P11226 248 aaPredicted RBP10.27□□□□□ -0.77
VPS39-214ENST00000614932 SPNP16150 400 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 SSTR1P30872 391 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 NUDT2P50583 147 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 ATXN3P54252 364 aaPredicted RBP10.27□□□□□ -0.77
VPS39-214ENST00000614932 TNK2Q07912 1038 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 TOP3AQ13472 1001 aaPredicted RBP10.27□□□□□ -0.77
VPS39-214ENST00000614932 AQP6Q13520 282 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 HSDL1Q3SXM5 330 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 HORMAD1Q86X24 394 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 FBXO16Q8IX29 292 aaPredicted RBP10.27□□□□□ -0.77
VPS39-214ENST00000614932 FAM71AQ8IYT1 594 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 CPA6Q8N4T0 437 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 MCPH1Q8NEM0 835 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 SHCBP1Q8NEM2 672 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 PSMA8Q8TAA3 256 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 PIWIL2Q8TC59 973 aaKnown RBP10.27□□□□□ -0.77
VPS39-214ENST00000614932 SNAPC3Q92966 411 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 MAGED4Q96JG8 741 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 SAMD11Q96NU1 681 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 PCYT2Q99447 389 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 GDF15Q99988 308 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 FAM118BQ9BPY3 351 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 SPATC1LQ9H0A9 340 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 ABCB10Q9NRK6 738 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 ZNF175Q9Y473 711 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 SNX13Q9Y5W8 968 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 MN1Q10571 1320 aaPredicted RBP10.27□□□□□ -0.77
VPS39-214ENST00000614932 AIM2O14862 343 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 KRT37O76014 449 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 PDGFAP04085 211 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 CYP3A5P20815 502 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 CYP2C18P33260 490 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 TRIM23P36406 574 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 HLCSP50747 726 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 ARHGDIAP52565 204 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 NDST1P52848 882 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 LAMC2Q13753 1193 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 CEACAM7Q14002 265 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 MORF4L2Q15014 288 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 Q5BKY6 102 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 TDRD10Q5VZ19 366 aaKnown RBP10.27□□□□□ -0.77
VPS39-214ENST00000614932 CRTC3Q6UUV7 619 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 LBX2Q6XYB7 198 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 CDHR3Q6ZTQ4 885 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 WDR49Q8IV35 697 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 EID3Q8N140 333 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 UBR7Q8N806 425 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 MFSD2AQ8NA29 543 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 TDRD5Q8NAT2 981 aaKnown RBP10.27□□□□□ -0.77
VPS39-214ENST00000614932 KYQ8NBH2 561 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 IL17RDQ8NFM7 739 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 OR7D4Q8NG98 312 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 OR5B17Q8NGF7 314 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 OR6Q1Q8NGQ2 317 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 ZNF564Q8TBZ8 553 aaPredicted RBP10.27□□□□□ -0.77
VPS39-214ENST00000614932 RIPOR3Q96MK2 946 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 DACH2Q96NX9 599 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 TWNKQ96RR1 684 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 MSTO1Q9BUK6 570 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 ST6GALNAC4Q9H4F1 302 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 FAM96AQ9H5X1 160 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 NTN4Q9HB63 628 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 PDLIM7Q9NR12 457 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 FAM105AQ9NUU6 356 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 EMC3Q9P0I2 261 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 KLF15Q9UIH9 416 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 PLLPQ9Y342 182 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 DOCK1Q14185 1865 aa10.27□□□□□ -0.77
VPS39-214ENST00000614932 TRAV6A0A075B6T7 132 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 HMGN1P05114 100 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 RETP07949 1114 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 CD58P19256 250 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 MMP8P22894 467 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 RPL9P32969 192 aaKnown RBP10.26□□□□□ -0.77
VPS39-214ENST00000614932 DDOSTP39656 456 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 OAZ1P54368 228 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 PKNOX1P55347 436 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 TYSND1Q2T9J0 566 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 PLEKHM3Q6ZWE6 761 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 FAM9CQ8IZT9 166 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 PHTF2Q8N3S3 785 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 SHC3Q92529 594 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 HERPUD2Q9BSE4 406 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 ADI1Q9BV57 179 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 MUC3BQ9H195 1237 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 ADAMTS10Q9H324 1103 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 SLC35C2Q9NQQ7 365 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 WDR70Q9NW82 654 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 RBAKQ9NYW8 714 aaPredicted RBP10.26□□□□□ -0.77
VPS39-214ENST00000614932 RLFQ13129 1914 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 PDHXO00330 501 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 ACOT8O14734 319 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 DCXO43602 365 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 UGT2B11O75310 529 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 IFNA14P01570 189 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 YES1P07947 543 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 HNF1BP35680 557 aa10.26□□□□□ -0.77
VPS39-214ENST00000614932 POLR2IP36954 125 aaKnown RBP10.26□□□□□ -0.77
VPS39-214ENST00000614932 EIF2DP41214 584 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms