RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 NCKIPSDQ9NZQ3 722 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 KLQ9UEF7 1012 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 NOCTQ9UK39 431 aaKnown RBP8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 RNF215Q9Y6U7 377 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 SDK2Q58EX2 2172 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 APCP25054 2843 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 BLACEA4D250 179 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 C9orf172C9J069 976 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 RASA4BC9J798 803 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 F8VZ95 297 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 J3KR12 359 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 RASA4O43374 803 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 CREB3O43889 395 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 IGSF6O95976 241 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 JMJD7P0C870 316 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 CCL4P13236 92 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 UCHL3P15374 230 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 ITGB6P18564 788 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 XPAP23025 273 aaPredicted RBP8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 EPHB2P29323 1055 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 SDC4P31431 198 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 RFC1P35251 1148 aaPredicted RBP8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 SCNN1AP37088 669 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 MAPKAPK2P49137 400 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 LIG3P49916 1009 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 MAZP56270 477 aaKnown RBP8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 BPIFB4P59827 614 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 SRP54P61011 504 aaKnown RBP8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 YPEL5P62699 121 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 FMO1Q01740 532 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 NFATC4Q14934 902 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 CLCA4Q14CN2 919 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 C16orf72Q14CZ0 275 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 PTPRRQ15256 657 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 ELOCQ15369 112 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 PHF19Q5T6S3 580 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 HIST2H2BCQ6DN03 193 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 SCYL2Q6P3W7 929 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 PTRH1Q86Y79 214 aaKnown RBP8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 CAMK1DQ8IU85 385 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 CCNJLQ8IV13 435 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 RCBTB1Q8NDN9 531 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 PTCD2Q8WV60 388 aaKnown RBP8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 PATE1Q8WXA2 126 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 USP7Q93009 1102 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 CCDC97Q96F63 343 aaPredicted RBP8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 PCDHB18PQ96TA0 734 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 NCAPGQ9BPX3 1015 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 ARHGAP9Q9BRR9 750 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 TUBGCP2Q9BSJ2 902 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 LGR4Q9BXB1 951 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 TMEM168Q9H0V1 697 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 MAGEH1Q9H213 219 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 LRRC4CQ9HCJ2 640 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 NLRC4Q9NPP4 1024 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 MOSPD1Q9UJG1 213 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 HPCAL4Q9UM19 191 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 DAAM1Q9Y4D1 1078 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 PCDHGA4Q9Y5G9 962 aa8.71□□□□□ -1.02
SHKBP1-220ENST00000599716 AKAP9Q99996 3911 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 A0A0U1RQS6 177 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 CCP110O43303 1012 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 LSM8O95777 96 aaKnown RBP8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 CYP1A1P04798 512 aaPredicted RBP8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 GM2AP17900 193 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 MMP8P22894 467 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 MPSTP25325 297 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 OR1D5P58170 312 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 NRG1Q02297 640 aaPredicted RBP8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 PTP4A2Q12974 167 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 TBR1Q16650 682 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 UGP2Q16851 508 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 AMZ1Q400G9 498 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 TMEM52BQ4KMG9 183 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 MANEAQ5SRI9 462 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 WDR59Q6PJI9 974 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 XKR5Q6UX68 686 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 ARHGAP36Q6ZRI8 547 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 TAF8Q7Z7C8 310 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 DNAAF5Q86Y56 855 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 PLPP6Q8IY26 295 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 RTL3Q8N8U3 475 aaKnown RBP8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 FAM46DQ8NEK8 389 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 GPR156Q8NFN8 814 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 ARHGEF26Q96DR7 871 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 SGF29Q96ES7 293 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 WDR92Q96MX6 357 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 NUDT22Q9BRQ3 303 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 OSBPL1AQ9BXW6 950 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 VPS16Q9H269 839 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 GANQ9H2C0 597 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 DPEP2Q9H4A9 486 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 ZNF768Q9H5H4 540 aaKnown RBP8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 CYP4F12Q9HCS2 524 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 PLEKHB1Q9UF11 243 aaPredicted RBP8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 PCDHGA7Q9Y5G6 932 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 CSMD2Q7Z408 3487 aa8.7□□□□□ -1.02
SHKBP1-220ENST00000599716 RIOK3O14730 519 aaKnown RBP8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 TEX33O43247 280 aa8.69□□□□□ -1.02
SHKBP1-220ENST00000599716 B4GAT1O43505 415 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms