RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PRDM6Q9NQX0 595 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 CACNA2D2Q9NY47 1150 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 FBXL21Q9UKT6 434 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 PPM1HQ9ULR3 514 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 PPIL1Q9Y3C6 166 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 WASF2Q9Y6W5 498 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 A0A0J9YYE9 177 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 EXOC1LA0A1B0GW35 172 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 TCRBV9S1A1TA0A576 114 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 MROH6A6NGR9 719 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 C19orf67A6NJJ6 358 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 KPNA3O00505 521 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-209ENST00000597423 RASGRF2O14827 1237 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 IL1BP01584 269 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 TRBC1P01850 177 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 MYZAPP0CAP1 466 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 HLA-EP13747 358 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 LPOP22079 712 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-209ENST00000597423 PRKCHP24723 683 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 SLC8A1P32418 973 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 MGAT5Q09328 741 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 MSLNQ13421 630 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-209ENST00000597423 NAB1Q13506 487 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 C2orf27AQ580R0 203 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 EOGTQ5NDL2 527 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 CEP85LQ5SZL2 805 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 PDPK2PQ6A1A2 396 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 ERAP2Q6P179 960 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 GLT6D1Q7Z4J2 308 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 MTERF4Q7Z6M4 381 aaKnown RBP15.31■□□□□ 0.04
TRIM28-209ENST00000597423 TTC7BQ86TV6 843 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 SFTPA1Q8IWL2 248 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 SYNPOQ8N3V7 929 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 UHMK1Q8TAS1 419 aaKnown RBP15.31■□□□□ 0.04
TRIM28-209ENST00000597423 WDR83Q9BRX9 315 aaKnown RBP15.31■□□□□ 0.04
TRIM28-209ENST00000597423 STMN4Q9H169 189 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-209ENST00000597423 PRSS16Q9NQE7 514 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 NSMCE4AQ9NXX6 385 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 MOCS1Q9NZB8 636 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 SLC24A2Q9UI40 661 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 RABGEF1Q9UJ41 708 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 PKP3Q9Y446 797 aa15.31■□□□□ 0.04
TRIM28-209ENST00000597423 TSPAN11A1L157 253 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 STX7O15400 261 aaKnown RBP15.3■□□□□ 0.04
TRIM28-209ENST00000597423 ITGB7P26010 798 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 HADHAP40939 763 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 MSH2P43246 934 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 PRAMEP78395 509 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 ILF2Q12905 390 aaKnown RBP15.3■□□□□ 0.04
TRIM28-209ENST00000597423 CAMK2GQ13555 558 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-209ENST00000597423 THOC5Q13769 683 aaKnown RBP15.3■□□□□ 0.04
TRIM28-209ENST00000597423 LRRC32Q14392 662 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 UGP2Q16851 508 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 FBXL19Q6PCT2 694 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 CTAGE3PQ8IX95 158 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 LMNTD2Q8IXW0 634 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 RIBC1Q8N443 379 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-209ENST00000597423 ZNF366Q8N895 744 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 PIP4K2CQ8TBX8 421 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 CALML6Q8TD86 181 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 LYSMD1Q96S90 227 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 FAM129BQ96TA1 746 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 ACOX2Q99424 681 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 GABRG3Q99928 467 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 MTG2Q9H4K7 406 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 ZFYVE1Q9HBF4 777 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 C20orf96Q9NUD7 363 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-209ENST00000597423 VPS18Q9P253 973 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 TXNDC16Q9P2K2 825 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 NFS1Q9Y697 457 aa15.3■□□□□ 0.04
TRIM28-209ENST00000597423 TLDC2A0PJX2 215 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 CAPN8A6NHC0 703 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 C16orf96A6NNT2 1141 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 UPK3BL1B0FP48 263 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 UPK3BL2E5RIL1 263 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 LDB2O43679 373 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 ATG13O75143 517 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 KLF8O95600 359 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-209ENST00000597423 ADH1BP00325 375 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 CTPS1P17812 591 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 NMBRP28336 390 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 ATP5DP30049 168 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 HNF1BP35680 557 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 PTPN5P54829 565 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 ARHGEF7Q14155 803 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 CNGA3Q16281 694 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 KRT71Q3SY84 523 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 ZDHHC20Q5W0Z9 365 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 KIAA0930Q6ICG6 404 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-209ENST00000597423 ESRP1Q6NXG1 681 aaKnown RBP15.29■□□□□ 0.04
TRIM28-209ENST00000597423 CES3Q6UWW8 571 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 TAOK1Q7L7X3 1001 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 LRRC6Q86X45 466 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 OR2T3Q8NH03 318 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 RAB7BQ96AH8 199 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 MFSD3Q96ES6 412 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 CERS2Q96G23 380 aa15.29■□□□□ 0.04
TRIM28-209ENST00000597423 FCRL3Q96P31 734 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-209ENST00000597423 RSPH9Q9H1X1 276 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-209ENST00000597423 MED4Q9NPJ6 270 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms