RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ALPIP09923 528 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 NMBRP28336 390 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 STX2P32856 288 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 POLR2LP62875 67 aaKnown RBP14.72□□□□□ -0.05
VRK3-212ENST00000596814 STARD3Q14849 445 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 ANKRD20A4Q4UJ75 823 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 ALS2CLQ60I27 953 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 NLRP9Q7RTR0 991 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 IQCKQ8N0W5 287 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 TXNDC5Q8NBS9 432 aaKnown RBP14.72□□□□□ -0.05
VRK3-212ENST00000596814 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.72□□□□□ -0.05
VRK3-212ENST00000596814 HCAR2Q8TDS4 363 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 FBF1Q8TES7 1133 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 ERLEC1Q96DZ1 483 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 MFSD3Q96ES6 412 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 PPP1R16AQ96I34 528 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 ZNF778Q96MU6 729 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 ZIM3Q96PE6 472 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 ASB2Q96Q27 587 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 SRPK1Q96SB4 655 aaKnown RBP14.72□□□□□ -0.05
VRK3-212ENST00000596814 RUFY1Q96T51 708 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 MAGEE1Q9HCI5 957 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 WNT16Q9UBV4 365 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 SARDHQ9UL12 918 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 MROH6A6NGR9 719 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 ATP8B1O43520 1251 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 LDB2O43679 373 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 ADAM23O75077 832 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 PAPSS2O95340 614 aaPredicted RBP14.71□□□□□ -0.05
VRK3-212ENST00000596814 SHBGP04278 402 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 HOXB2P14652 356 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 ITGB7P26010 798 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 ABL2P42684 1182 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 PSMD8P48556 350 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 IFFO1Q0D2I5 559 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 TAF1AQ15573 450 aaPredicted RBP14.71□□□□□ -0.05
VRK3-212ENST00000596814 POM121L1PQ3SYA9 428 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 HSF5Q4G112 596 aaPredicted RBP14.71□□□□□ -0.05
VRK3-212ENST00000596814 TSTD2Q5T7W7 516 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 PARS2Q7L3T8 475 aaKnown RBP14.71□□□□□ -0.05
VRK3-212ENST00000596814 MMAAQ8IVH4 418 aaKnown RBP14.71□□□□□ -0.05
VRK3-212ENST00000596814 UBALD2Q8IYN6 164 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 MDGA1Q8NFP4 955 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 OR2W6PQ8NHA6 318 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 RPLP0P6Q8NHW5 317 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 SHDQ96IW2 340 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 FCRL3Q96P31 734 aaPredicted RBP14.71□□□□□ -0.05
VRK3-212ENST00000596814 TRABDQ9H4I3 376 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 MRPS17Q9Y2R5 130 aaKnown RBP14.71□□□□□ -0.05
VRK3-212ENST00000596814 PPIL1Q9Y3C6 166 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 ZNF711Q9Y462 761 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 ARL5AQ9Y689 179 aa14.71□□□□□ -0.05
VRK3-212ENST00000596814 ZCWPW2A0A1B0GU75 182 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 KRBA1A5PL33 1030 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 C2orf81A6NN90 581 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 C16orf96A6NNT2 1141 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 UPK3BL1B0FP48 263 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 UPK3BL2E5RIL1 263 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 RNASEH1O60930 286 aaKnown RBP14.7□□□□□ -0.06
VRK3-212ENST00000596814 SLC4A1P02730 911 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 PAMP19021 973 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 XPAP23025 273 aaPredicted RBP14.7□□□□□ -0.06
VRK3-212ENST00000596814 NFKBIAP25963 317 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 HNF1BP35680 557 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 EIF3BP55884 814 aaKnown RBP14.7□□□□□ -0.06
VRK3-212ENST00000596814 FAM193AP78312 1265 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 PTPRRQ15256 657 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 UGP2Q16851 508 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 FAM46CQ5VWP2 391 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 ESRP1Q6NXG1 681 aaKnown RBP14.7□□□□□ -0.06
VRK3-212ENST00000596814 TRMT10BQ6PF06 316 aaKnown RBP14.7□□□□□ -0.06
VRK3-212ENST00000596814 LRIG3Q6UXM1 1119 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 PEX13Q92968 403 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 SCRN2Q96FV2 425 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 MCCC1Q96RQ3 725 aaPredicted RBP14.7□□□□□ -0.06
VRK3-212ENST00000596814 LYSMD1Q96S90 227 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 RSPH9Q9H1X1 276 aaPredicted RBP14.7□□□□□ -0.06
VRK3-212ENST00000596814 ACBD3Q9H3P7 528 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 ACSS3Q9H6R3 686 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 FBRSQ9HAH7 460 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 DYRK4Q9NR20 520 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 TREX1Q9NSU2 369 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 RABGEF1Q9UJ41 708 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 NFS1Q9Y697 457 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 FAM169AQ9Y6X4 670 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 SCN8AQ9UQD0 1980 aa14.7□□□□□ -0.06
VRK3-212ENST00000596814 EXOC1LA0A1B0GW35 172 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 NPIPB15A6NHN6 443 aaPredicted RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 AURKAO14965 403 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 ALDH1A2O94788 518 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 TARSP26639 723 aaKnown RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 ZNF140P52738 457 aaPredicted RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 PDE1BQ01064 536 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 FRG1Q14331 258 aaKnown RBP14.69□□□□□ -0.06
VRK3-212ENST00000596814 LRRC32Q14392 662 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 STAT4Q14765 748 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 KLHL38Q2WGJ6 581 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 LRRC73Q5JTD7 316 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 EOGTQ5NDL2 527 aa14.69□□□□□ -0.06
VRK3-212ENST00000596814 KIAA0930Q6ICG6 404 aaPredicted RBP14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms