RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 GHITMQ9H3K2 345 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 KLHL31Q9H511 634 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 FZD3Q9NPG1 666 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 DECR2Q9NUI1 292 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 SEPT11Q9NVA2 429 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 TMEM184CQ9NVA4 438 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 ANKRD10Q9NXR5 420 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 MSRB1Q9NZV6 116 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 MTMR6Q9Y217 621 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 SLC45A1Q9Y2W3 748 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 CAPN7Q9Y6W3 813 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 NOTCH2Q04721 2471 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 TTBK1Q5TCY1 1321 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 HSPB2A8KAH6 182 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 MYO1GB0I1T2 1018 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 SCAMP1O15126 338 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 HNRNPCL1O60812 293 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 CD58P19256 250 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 MYF6P23409 242 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 TBXAS1P24557 533 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 CHATP28329 748 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 AVPR1AP37288 418 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 PBX3P40426 434 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 RASSF2P50749 326 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 CLDN2P57739 230 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 MC1RQ01726 317 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 FAM27E3Q08E93 113 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 CHAF1BQ13112 559 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 MTX1Q13505 466 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 KCTD2Q14681 263 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 WTAPQ15007 396 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 HSPB2Q16082 182 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 KRT24Q2M2I5 525 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 RILPL1Q5EBL4 403 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 HMBOX1Q6NT76 420 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 TSSK4Q6SA08 328 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 PIM3Q86V86 326 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 LURAP1LQ8IV03 231 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 RBFAQ8N0V3 343 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 TTC39CQ8N584 583 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 GJC3Q8NFK1 279 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 SLC35F5Q8WV83 523 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 PSPC1Q8WXF1 523 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 FBXL8Q96CD0 374 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 FAM120BQ96EK7 910 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 NCAPGQ9BPX3 1015 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 MXRA8Q9BRK3 442 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 NUF2Q9BZD4 464 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 PLEKHA4Q9H4M7 779 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 MVB12BQ9H7P6 319 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 KAT14Q9H8E8 782 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 BPIFA1Q9NP55 256 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 SMYD2Q9NRG4 433 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 SLC6A13Q9NSD5 602 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 RRP7BPQ9NSQ0 103 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 TBC1D29Q9UFV1 150 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 NDRG3Q9UGV2 375 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 MKLN1Q9UL63 735 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 CORO1CQ9ULV4 474 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 PCDHA12Q9UN75 941 aa3.87□□□□□ -1.79
SMCHD1-209ENST00000583441 A0A0U1RQF3 1178 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 FAM237BA0A1B0GVD1 139 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 DYTNA2CJ06 578 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 KLRF2D3W0D1 207 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 NPIPB11E5RHQ5 1161 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 PTGES3LE9PB15 166 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 STMND1H3BQB6 276 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 VILLO15195 856 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 SEC14L5O43304 696 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 FIBPO43427 364 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 TIMM44O43615 452 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 LIASO43766 372 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 SLC28A2O43868 658 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 ATP2C2O75185 946 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 NDUFS3O75489 264 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 SEC31AO94979 1220 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 CGAP01215 116 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 CENPBP07199 599 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 TFPIP10646 304 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 SRD5A1P18405 259 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 DCTDP32321 178 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 PIP4K2AP48426 406 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 CDH12P55289 794 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 TFAP4Q01664 338 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 CREB5Q02930 508 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 ST3GAL1Q11201 340 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 EPS8Q12929 822 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 FRG1Q14331 258 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 MED22Q15528 200 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 Q5PR19 223 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 ASPHD1Q5U4P2 390 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 TTI2Q6NXR4 508 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 ZNF549Q6P9A3 640 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 KLHL35Q6PF15 583 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 TRILQ7L0X0 811 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 CUZD1Q86UP6 607 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 PALB2Q86YC2 1186 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 SFTPA2Q8IWL1 248 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 ADGRF2Q8IZF7 708 aa3.86□□□□□ -1.79
SMCHD1-209ENST00000583441 ZCCHC9Q8N567 271 aaKnown RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms