RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SULT2A1Q06520 285 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 CDC16Q13042 620 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 MGAT5BQ3V5L5 792 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 NADSYN1Q6IA69 706 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 TMEM154Q6P9G4 183 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 RSPO2Q6UXX9 243 aaPredicted RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 LDB1Q86U70 411 aaPredicted RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 SLC43A3Q8NBI5 491 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 CEP70Q8NHQ1 597 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 ANKRD49Q8WVL7 239 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 GATA6Q92908 595 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 MYEOVQ96EZ4 313 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 POM121Q96HA1 1249 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 SERPINI1Q99574 410 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 SEPT5Q99719 369 aaPredicted RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 SEMA3CQ99985 751 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 POLR1EQ9GZS1 481 aaKnown RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 CYP4F12Q9HCS2 524 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 COMMD8Q9NX08 183 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 MARCH4Q9P2E8 410 aaPredicted RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 VPS28Q9UK41 221 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 ABT1Q9ULW3 272 aaKnown RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 KCTD3Q9Y597 815 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 COPG1Q9Y678 874 aaKnown RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 VWA8A3KMH1 1905 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 GJB3O75712 270 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 ALDH2P05091 517 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 SP100P23497 879 aaPredicted RBP10.12□□□□□ -0.79
VPS53-220ENST00000576149 CDKN2DP55273 166 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 GALNT1Q10472 559 aaPredicted RBP10.12□□□□□ -0.79
VPS53-220ENST00000576149 BTG3Q14201 252 aaPredicted RBP10.12□□□□□ -0.79
VPS53-220ENST00000576149 GSTA3Q16772 222 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 TMEM207Q6UWW9 146 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 ABI1Q8IZP0 508 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 HIPK4Q8NE63 616 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 PEX13Q92968 403 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 RCN3Q96D15 328 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 SPDL1Q96EA4 605 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 FEM1CQ96JP0 617 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 FAR2Q96K12 515 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 ELAC1Q9H777 363 aaKnown RBP10.12□□□□□ -0.79
VPS53-220ENST00000576149 CCSER2Q9H7U1 834 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 EML4Q9HC35 981 aaKnown RBP10.12□□□□□ -0.79
VPS53-220ENST00000576149 MARCH5Q9NX47 278 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 GTSE1Q9NYZ3 720 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 KLF15Q9UIH9 416 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 ADAMTS6Q9UKP5 1117 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 MIA3Q5JRA6 1907 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 OR51F1A6NGY5 319 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 H3BNX3 289 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 MUSKO15146 869 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 TBC1D4O60343 1298 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 TLR5O60602 858 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 EPOP01588 193 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 HLA-DPA1P20036 260 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 TACR2P21452 398 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 SP3Q02447 781 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 PIGGQ5H8A4 983 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 FAM45BPQ6NSW5 357 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 RNF19BQ6ZMZ0 732 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 CHSY3Q70JA7 882 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 SLC22A9Q8IVM8 553 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 PGAM4Q8N0Y7 254 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 PELI3Q8N2H9 469 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 FAM45AQ8TCE6 357 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 IFT43Q96FT9 208 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 MARK4Q96L34 752 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 TBATAQ96M53 351 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 CASD1Q96PB1 797 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 NR1H4Q96RI1 486 aaPredicted RBP10.12□□□□□ -0.79
VPS53-220ENST00000576149 ARPC5LQ9BPX5 153 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 SUDS3Q9H7L9 328 aaPredicted RBP10.12□□□□□ -0.79
VPS53-220ENST00000576149 EFCAB1Q9HAE3 211 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 PDFQ9HBH1 243 aa10.12□□□□□ -0.79
VPS53-220ENST00000576149 BPTFQ12830 3046 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 MAGEA13PA6NCF6 341 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 TCAF2A6NFQ2 919 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 ENPP3O14638 875 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 KIF1CO43896 1103 aaKnown RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 SKAP2O75563 359 aaPredicted RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 PENKP01210 267 aaPredicted RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 FGF1P05230 155 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 LINGO3P0C6S8 592 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 HSPA1AP0DMV8 641 aaKnown RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 HSPA1BP0DMV9 641 aaKnown RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 RAG1P15918 1043 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 KPNA1P52294 538 aaPredicted RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 SMARCB1Q12824 385 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 ILF2Q12905 390 aaKnown RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 LAMB3Q13751 1172 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 ZNF235Q14590 738 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 RFTN1Q14699 578 aaPredicted RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 ZNF423Q2M1K9 1284 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 GPR158Q5T848 1215 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 ALG1LQ6GMV1 187 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 BNC2Q6ZN30 1099 aaPredicted RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 LRRC8DQ7L1W4 858 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 ISCA2Q86U28 154 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 CUZD1Q86UP6 607 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 PDSS2Q86YH6 399 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms