RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RMDN1Q96DB5 314 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 FAM122AQ96E09 287 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 MYEOVQ96EZ4 313 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 VPS39Q96JC1 886 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 NECTIN4Q96NY8 510 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 RBBP8Q99708 897 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 TDRD1Q9BXT4 1180 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 CPEB1Q9BZB8 566 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 NKX2-4Q9H2Z4 354 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 MFSD1Q9H3U5 465 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 RHOJQ9H4E5 214 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 NOD2Q9HC29 1040 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 MAGEE1Q9HCI5 957 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 TREX1Q9NSU2 369 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 HCFC1R1Q9NWW0 138 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 DUS2Q9NX74 493 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 SLC27A6Q9Y2P4 619 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 YBX2Q9Y2T7 364 aaKnown RBP8.02□□□□□ -1.13
VPS39-213ENST00000570062 RAI2Q9Y5P3 530 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 COMMD10Q9Y6G5 202 aa8.02□□□□□ -1.13
VPS39-213ENST00000570062 TRIM49D1C9J1S8 452 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 F5H423 210 aaPredicted RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 F8W8V4 182 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 NPC1O15118 1278 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 BIRC5O15392 142 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 RPP40O75818 363 aaKnown RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 VAPBO95292 243 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ASMTLO95671 621 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 GLP2RO95838 553 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ATXN1LP0C7T5 689 aaKnown RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 PABPC1P11940 636 aaKnown RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 BMP2P12643 396 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 TYRP14679 529 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 GJA1P17302 382 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 OGNP20774 298 aaKnown RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 LPOP22079 712 aaPredicted RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 MZF1P28698 734 aaPredicted RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 TYK2P29597 1187 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ALDH3A1P30838 453 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 CCNFP41002 786 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 MTHFRP42898 656 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 CD151P48509 253 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 SUOXP51687 545 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 CLCN5P51795 746 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ST8SIA6P61647 398 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ECT2LQ008S8 904 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 POU4F1Q01851 419 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 GUCY1A3Q02108 690 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ASPHQ12797 758 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 LMAN2Q12907 356 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 SEPT6Q14141 434 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 CNGA3Q16281 694 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 PDK4Q16654 411 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 TSNAXIP1Q2TAA8 658 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 TAF1BQ53T94 588 aaPredicted RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 FSCBQ5H9T9 825 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 PITRM1Q5JRX3 1037 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 MROH9Q5TGP6 573 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ATG16L1Q676U5 607 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ANKRD54Q6NXT1 300 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 TRMT10BQ6PF06 316 aaKnown RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 CERS6Q6ZMG9 384 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 TPGS1Q6ZTW0 290 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ZNF771Q7L3S4 317 aaPredicted RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 RBM23Q86U06 439 aaKnown RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS39-213ENST00000570062 YAF2Q8IY57 180 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 KIRREL3Q8IZU9 778 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 SLC25A41Q8N5S1 370 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 PAF1Q8N7H5 531 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 OR2AP1Q8NGE2 309 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 LRRC8CQ8TDW0 803 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 DENND1AQ8TEH3 1009 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS39-213ENST00000570062 MRRFQ96E11 262 aaKnown RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 TCEAL4Q96EI5 215 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 MFSD3Q96ES6 412 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 FCRL3Q96P31 734 aaPredicted RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 TRIB3Q96RU7 358 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 APOL2Q9BQE5 337 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 OSBPL1AQ9BXW6 950 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 PLAC1Q9HBJ0 212 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 POPDC3Q9HBV1 291 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 ZFP14Q9HCL3 533 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 RAD18Q9NS91 495 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 IARS2Q9NSE4 1012 aaKnown RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 INTS10Q9NVR2 710 aaKnown RBP8.01□□□□□ -1.13
VPS39-213ENST00000570062 CTNNAL1Q9UBT7 734 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 FBXO10Q9UK96 956 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 CDH7Q9ULB5 785 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 PHTF1Q9UMS5 762 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 PLA2G4CQ9UP65 541 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 PKP3Q9Y446 797 aa8.01□□□□□ -1.13
VPS39-213ENST00000570062 A0A087X1B8 175 aa8□□□□□ -1.13
VPS39-213ENST00000570062 A0A1W2PPC1 479 aa8□□□□□ -1.13
VPS39-213ENST00000570062 A0A1W2PPM1 405 aa8□□□□□ -1.13
VPS39-213ENST00000570062 CXorf49A8MYA2 514 aaPredicted RBP8□□□□□ -1.13
VPS39-213ENST00000570062 WASH3PC4AMC7 463 aa8□□□□□ -1.13
VPS39-213ENST00000570062 NEDD8-MDP1E9PL57 170 aa8□□□□□ -1.13
VPS39-213ENST00000570062 H7C0S8 307 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms