RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PBKQ96KB5 322 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 VAT1Q99536 393 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 MLPHQ9BV36 600 aaPredicted RBP19.65■□□□□ 0.74
CLN3-225ENST00000566824 SLC17A9Q9BYT1 436 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 CAPN10Q9HC96 672 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 RSPH14Q9UHP6 348 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 TRHDEQ9UKU6 1024 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 PHTF1Q9UMS5 762 aa19.65■□□□□ 0.74
CLN3-225ENST00000566824 A0A1W2PR77 199 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 H0Y8X5 98 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 PSMB4P28070 264 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 HNF1BP35680 557 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 SUOXP51687 545 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 CLDN2P57739 230 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 POLR2LP62875 67 aaKnown RBP19.64■□□□□ 0.73
CLN3-225ENST00000566824 ELP6Q0PNE2 266 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 OLIG2Q13516 323 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 GALNT3Q14435 633 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 QPCTQ16769 361 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 ERAP2Q6P179 960 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 KIAA2013Q8IYS2 634 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 TAB3Q8N5C8 712 aaPredicted RBP19.64■□□□□ 0.73
CLN3-225ENST00000566824 PRELID2Q8N945 189 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 GLIS1Q8NBF1 620 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 OR2I1PQ8NGU4 316 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 CXorf40AQ8TE69 158 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 SPATA13Q96N96 652 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 FCRL5Q96RD9 977 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 MCCC1Q96RQ3 725 aaPredicted RBP19.64■□□□□ 0.73
CLN3-225ENST00000566824 KLF6Q99612 283 aaPredicted RBP19.64■□□□□ 0.73
CLN3-225ENST00000566824 GBA3Q9H227 469 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 HAUS2Q9NVX0 235 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 PPIL1Q9Y3C6 166 aa19.64■□□□□ 0.73
CLN3-225ENST00000566824 A0A1B0GTW7 788 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 A0A1B0GVT2 93 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 C5orf60A6NFR6 353 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 GDF9O60383 454 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 LRP3O75074 770 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 C6P13671 934 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 ETS1P14921 441 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 KCNJ1P48048 391 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 CNGA3Q16281 694 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 DUOXA1Q1HG43 343 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 SETMARQ53H47 684 aaPredicted RBP19.63■□□□□ 0.73
CLN3-225ENST00000566824 NAPEPLDQ6IQ20 393 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 SLC23A3Q6PIS1 610 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 LIPIQ6XZB0 460 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 PRR23CQ6ZRP0 262 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 SCRN2Q96FV2 425 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 MRGPRX2Q96LB1 330 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 CEP250Q9BV73 2442 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 AP1M1Q9BXS5 423 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 CAAP1Q9H8G2 361 aa19.63■□□□□ 0.73
CLN3-225ENST00000566824 A0A0J9YYE9 177 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 LNP1A1A4G5 178 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 METTL18O95568 372 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 TRBC1P01850 177 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 PIRTP0C851 137 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 VIPR1P32241 457 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 HOXD12P35452 270 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 CHRNA4P43681 627 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 WNT3AP56704 352 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 CCNG2Q16589 344 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 FAXCQ5TGI0 409 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 CRTC1Q6UUV9 634 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 GCNT7Q6ZNI0 430 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 RFLNAQ6ZTI6 216 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 TMEM145Q8NBT3 493 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 MBNL1Q9NR56 388 aaKnown RBP19.62■□□□□ 0.73
CLN3-225ENST00000566824 AASDHPPTQ9NRN7 309 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 FAM153AQ9UHL3 310 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 TTC7AQ9ULT0 858 aaPredicted RBP19.62■□□□□ 0.73
CLN3-225ENST00000566824 SLC6A14Q9UN76 642 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 ZNF148Q9UQR1 794 aa19.62■□□□□ 0.73
CLN3-225ENST00000566824 A0A1W2PQ67 120 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 KHNYNO15037 678 aaKnown RBP19.61■□□□□ 0.73
CLN3-225ENST00000566824 GCATO75600 419 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 ZSCAN5DPP0CG00 497 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 MSNP26038 577 aaKnown RBP19.61■□□□□ 0.73
CLN3-225ENST00000566824 EPHB1P54762 984 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 RACK1P63244 317 aaKnown RBP19.61■□□□□ 0.73
CLN3-225ENST00000566824 CDK18Q07002 472 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 SLC14A2Q15849 920 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 CDKN3Q16667 212 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 PAPD7Q5XG87 772 aaKnown RBP19.61■□□□□ 0.73
CLN3-225ENST00000566824 TTC27Q6P3X3 843 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 HSD11B1LQ7Z5J1 315 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 PELI3Q8N2H9 469 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 CBARPQ8N350 705 aaPredicted RBP19.61■□□□□ 0.73
CLN3-225ENST00000566824 IPMKQ8NFU5 416 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 CEP76Q8TAP6 659 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 CENPTQ96BT3 561 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 RTP4Q96DX8 246 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 BMFQ96LC9 184 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 NAPGQ99747 312 aaPredicted RBP19.61■□□□□ 0.73
CLN3-225ENST00000566824 FRMD8P1Q9BZ68 369 aaPredicted RBP19.61■□□□□ 0.73
CLN3-225ENST00000566824 SUSD2Q9UGT4 822 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 DMTF1Q9Y222 760 aa19.61■□□□□ 0.73
CLN3-225ENST00000566824 MYLKQ15746 1914 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 DMXL1Q9Y485 3027 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms