RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CETN2P41208 172 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 LIG3P49916 1009 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 THOP1P52888 689 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 HNRNPKP61978 463 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLK3-216ENST00000564468 IL9RQ01113 521 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 KIF5AQ12840 1032 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 SLC10A2Q12908 348 aaPredicted RBP13.47□□□□□ -0.25
CLK3-216ENST00000564468 LRRC14Q15048 493 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 HS1BP3Q53T59 392 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 ALG1LQ6GMV1 187 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 MFSD7Q6UXD7 560 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 DPPA4Q7L190 304 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 ZSWIM9Q86XI8 627 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 EXD1Q8NHP7 514 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 BAHD1Q8TBE0 780 aaPredicted RBP13.47□□□□□ -0.25
CLK3-216ENST00000564468 KIAA1524Q8TCG1 905 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 CENPTQ96BT3 561 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 SCNM1Q9BWG6 230 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 PCDHGC4Q9Y5F7 938 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 WDFY3Q8IZQ1 3526 aa13.47□□□□□ -0.25
CLK3-216ENST00000564468 SPTY2D1-AS1A0A0U1RR47 76 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 CCDC66A2RUB6 948 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 NEMP2A6NFY4 417 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 SRRM3A6NNA2 597 aaPredicted RBP13.46□□□□□ -0.25
CLK3-216ENST00000564468 H3BM21 787 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 RAD51BO15315 384 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 TNFSF14O43557 240 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 TGM2P21980 687 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 CDKN2BP42772 138 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 PEX5P50542 639 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 PFN3P60673 137 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 COPS2P61201 443 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 DYNLT1P63172 113 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 AP1B1Q10567 949 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 PDE1CQ14123 709 aaPredicted RBP13.46□□□□□ -0.25
CLK3-216ENST00000564468 SHBQ15464 509 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 TAZQ16635 292 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 LIPIQ6XZB0 460 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 SPOCD1Q6ZMY3 1216 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 USP45Q70EL2 814 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 PARGQ86W56 976 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 GATAD2AQ86YP4 633 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 CCDC50Q8IVM0 306 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 TP53I13Q8NBR0 393 aaPredicted RBP13.46□□□□□ -0.25
CLK3-216ENST00000564468 ACRBPQ8NEB7 543 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 ATL2Q8NHH9 583 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 BTN2A2Q8WVV5 523 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 ZCCHC14Q8WYQ9 949 aaKnown RBP13.46□□□□□ -0.25
CLK3-216ENST00000564468 GPR27Q9NS67 375 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 FTSJ1Q9UET6 329 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 DNPEPQ9ULA0 475 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 TFR2Q9UP52 801 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 WASF3Q9UPY6 502 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 TTLL3Q9Y4R7 772 aa13.46□□□□□ -0.25
CLK3-216ENST00000564468 PTPRBP23467 1997 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 TTC24A2A3L6 582 aaPredicted RBP13.45□□□□□ -0.26
CLK3-216ENST00000564468 MTSS1O43312 755 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 CST8O60676 142 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 PGLSO95336 258 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 LDOC1O95751 146 aaPredicted RBP13.45□□□□□ -0.26
CLK3-216ENST00000564468 JCHAINP01591 159 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 PRKCGP05129 697 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 ALPPL2P10696 532 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 SPINK2P20155 84 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 VIPR1P32241 457 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 IGFALSP35858 605 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 EPHB1P54762 984 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 IFI35P80217 286 aaPredicted RBP13.45□□□□□ -0.26
CLK3-216ENST00000564468 TRAF2Q12933 501 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 BNIP3Q12983 259 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 ARHGEF7Q14155 803 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 PPP2R5EQ16537 467 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 KAZNQ674X7 775 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 TMEM139Q8IV31 216 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 SYCE1Q8N0S2 351 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 SLC22A18ASQ8N1D0 253 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 P3H4Q92791 437 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 GATA6Q92908 595 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 SCRN2Q96FV2 425 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 LGMNQ99538 433 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 IL12RB2Q99665 862 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 GOLPH3Q9H4A6 298 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 DNAJC28Q9NX36 388 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 B4GALT6Q9UBX8 382 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 SALL4Q9UJQ4 1053 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 LHX6Q9UPM6 363 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 BTBD3Q9Y2F9 522 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 COQ6Q9Y2Z9 468 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 REXO2Q9Y3B8 237 aaKnown RBP13.45□□□□□ -0.26
CLK3-216ENST00000564468 PPIL1Q9Y3C6 166 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 NEUROG3Q9Y4Z2 214 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 PCDHA3Q9Y5H8 950 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 RAI2Q9Y5P3 530 aa13.45□□□□□ -0.26
CLK3-216ENST00000564468 RCCD1A6NED2 376 aa13.44□□□□□ -0.26
CLK3-216ENST00000564468 KCNK1O00180 336 aa13.44□□□□□ -0.26
CLK3-216ENST00000564468 PSMD11O00231 422 aa13.44□□□□□ -0.26
CLK3-216ENST00000564468 NRDCO43847 1150 aa13.44□□□□□ -0.26
CLK3-216ENST00000564468 PIAS2O75928 621 aa13.44□□□□□ -0.26
CLK3-216ENST00000564468 CSF2P04141 144 aa13.44□□□□□ -0.26
CLK3-216ENST00000564468 HLA-DQB2P05538 268 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms