RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 CACNA1SQ13698 1873 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 TRPM3Q9HCF6 1732 aaPredicted RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 SNTNA6NMZ2 147 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 J3QRK9 145 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 TSPAN4O14817 238 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 GRIN3BO60391 1043 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 TADA2AO75478 443 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 F9P00740 461 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 FGFR1P11362 822 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 MTHFD1P11586 935 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 CCNCP24863 283 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 MAXP61244 160 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CSTF3Q12996 717 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 ZNF846Q147U1 533 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 GRIK4Q16099 956 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 IL27RAQ6UWB1 636 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 BBS7Q8IWZ6 715 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 PLD6Q8N2A8 252 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 SFRP1Q8N474 314 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 NAT16Q8N8M0 369 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 HTRA1Q92743 480 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 FBXL8Q96CD0 374 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 FAM120BQ96EK7 910 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 NTPCRQ9BSD7 190 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 RHOJQ9H4E5 214 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 ARHGEF4Q9NR80 690 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 PLK2Q9NYY3 685 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 SPEF1Q9Y4P9 236 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 KRT87PA6NCN2 255 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 B4GALT4O60513 344 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CPSF4O95639 269 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 ZNF37AP17032 561 aaPredicted RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 ALDH4A1P30038 563 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 L1CAMP32004 1257 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 MATKP42679 507 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 BNIP2Q12982 314 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 TRAF3Q13114 568 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 SEMA5AQ13591 1074 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 IKBIPQ70UQ0 350 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 ILDR2Q71H61 639 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 ANKRD52Q8NB46 1076 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 PHC3Q8NDX5 983 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 SPATA22Q8NHS9 363 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 KLHL32Q96NJ5 620 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CINPQ9BW66 212 aaPredicted RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 SPATC1LQ9H0A9 340 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 PNPLA8Q9NP80 782 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CCDC59Q9P031 241 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 ZNF112Q9UJU3 913 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 FAM32AQ9Y421 112 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 DDX60Q8IY21 1712 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 UBR2Q8IWV8 1755 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CCL22O00626 93 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 MDM4O15151 490 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 VPS26AO75436 327 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 RECQL4O94761 1208 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 ZBTB7AO95365 584 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CST1P01037 141 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 UGT1A6P19224 532 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 UGT1A1P22309 533 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 UGT1A4P22310 534 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 PRKCHP24723 683 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 UGT1A3P35503 534 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 UGT1A5P35504 534 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 ENTPD1P49961 510 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 GNA12Q03113 381 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 C11orf91Q3C1V1 193 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 AARS2Q5JTZ9 985 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 SPANXN2Q5MJ10 180 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 C10orf120Q5SQS8 335 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 MAP1SQ66K74 1059 aaPredicted RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 OGFOD2Q6N063 350 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 SLC26A9Q7LBE3 791 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CMASQ8NFW8 434 aaPredicted RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 VPS33AQ96AX1 596 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 RPRD1AQ96P16 312 aaPredicted RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 UGT2B28Q9BY64 529 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 MUC3BQ9H195 1237 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 SLC30A1Q9Y6M5 507 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 PNMA8CA0A1B0GUJ8 204 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CCDC182A6NF36 153 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 NEMP2A6NFY4 417 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CNOT3O75175 753 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 ENDOD1O94919 500 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 SEC24AO95486 1093 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 HOXC6P09630 235 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 PCSK1P29120 753 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 TALDO1P37837 337 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 ATN1P54259 1190 aaPredicted RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 OAZ1P54368 228 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 EN1Q05925 392 aaPredicted RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.14□□□□□ -1.273e-7■■■■□ 20.8
USP3-210ENST00000559192 TAB1Q15750 504 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 TEX44Q53QW1 395 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CELF3Q5SZQ8 465 aaKnown RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 WSCD1Q658N2 575 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 ZNF57Q68EA5 555 aaPredicted RBP7.14□□□□□ -1.27
USP3-210ENST00000559192 NCBP2-AS2Q69YL0 99 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 CRTC3Q6UUV7 619 aa7.14□□□□□ -1.27
USP3-210ENST00000559192 ZNF410Q86VK4 478 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms