RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 AGKQ53H12 422 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 NUP93Q8N1F7 819 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 TMEM102Q8N9M5 508 aaPredicted RBP16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 HMGCLL1Q8TB92 370 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 HDAC10Q969S8 669 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 L3HYPDHQ96EM0 354 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 SLC25A23Q9BV35 468 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 FBXO44Q9H4M3 255 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 SPC25Q9HBM1 224 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 TNFRSF12AQ9NP84 129 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 UBAP1Q9NZ09 502 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 CCDC167Q9P0B6 97 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 AP4B1Q9Y6B7 739 aa16.1■□□□□ 0.17
CHMP1A-202ENST00000535997 LOC285095A0A1B0GVY8 99 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 E7ENX8 843 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 HAPLN1P10915 354 aaPredicted RBP16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 ACADVLP49748 655 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 PLK1P53350 603 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 SH3BGRP55822 239 aaPredicted RBP16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 TBX4P57082 545 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 MAXP61244 160 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 PRAMEP78395 509 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 RHDQ02161 417 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 RBBP5Q15291 538 aaKnown RBP16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 C11orf91Q3C1V1 193 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 SLC39A12Q504Y0 691 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 MS4A13Q5J8X5 152 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 TFAP2DQ7Z6R9 452 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 PCDH20Q8N6Y1 951 aaKnown RBP16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 TADA1Q96BN2 335 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 PABPC5Q96DU9 382 aaKnown RBP16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 GSTO2Q9H4Y5 243 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 VCX3AQ9NNX9 186 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 SPAG4Q9NPE6 437 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 AP4S1Q9Y587 144 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 DOCK4Q8N1I0 1966 aa16.09■□□□□ 0.17
CHMP1A-202ENST00000535997 H0YJX3 145 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 FBP2O00757 339 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 TNPO2O14787 897 aaKnown RBP16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 TRIM24O15164 1050 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 RNASEH2AO75792 299 aaKnown RBP16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 RPL5P46777 297 aaKnown RBP16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 NFKB2Q00653 900 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 DSC2Q02487 901 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 PAOXQ6QHF9 649 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 TMEM207Q6UWW9 146 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 LARP4Q71RC2 724 aaKnown RBP eCLIP16.08■□□□□ 0.171e-7■■□□□ 13.4
CHMP1A-202ENST00000535997 DCP1BQ8IZD4 617 aaKnown RBP16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 AHI1Q8N157 1196 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 FAM156AQ8NDB6 213 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 RIN3Q8TB24 985 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 PEX13Q92968 403 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 FUBP3Q96I24 572 aaKnown RBP eCLIP16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 KLHL5Q96PQ7 755 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 SP110Q9HB58 689 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 PLK2Q9NYY3 685 aa16.08■□□□□ 0.17
CHMP1A-202ENST00000535997 IGLV3-10A0A075B6K4 115 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 NRP2O60462 931 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 SUPT7LO94864 414 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 OAZ2O95190 189 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 CLPTM1O96005 669 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 C8BP07358 591 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 HOXB8P17481 243 aaPredicted RBP16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 KCNC1P48547 511 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 CDKN2DP55273 166 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 DYNC1I2Q13409 638 aaKnown RBP16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 LAMB3Q13751 1172 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 BTG3Q14201 252 aaPredicted RBP16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 IHHQ14623 411 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 LPIN1Q14693 890 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 PPP1R3AQ16821 1122 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 SIRPB2Q5JXA9 342 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 ZNF678Q5SXM1 525 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 GPR158Q5T848 1215 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 REP15Q6BDI9 236 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 FAM45BPQ6NSW5 357 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 HACD2Q6Y1H2 254 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 FAM45AQ8TCE6 357 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 PSMG2Q969U7 264 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 DGCR14Q96DF8 476 aaKnown RBP16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 C8orf48Q96LL4 319 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 ASB2Q96Q27 587 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 ALG9Q9H6U8 611 aa16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 ABI2Q9NYB9 513 aaPredicted RBP16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 UXTQ9UBK9 157 aaPredicted RBP16.08■□□□□ 0.16
CHMP1A-202ENST00000535997 F8W810 466 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 UBFD1O14562 309 aaKnown RBP16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 INPPL1O15357 1258 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 LDB2O43679 373 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 CNTN5O94779 1100 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 TNFAIP8O95379 198 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 OR4Q2P0C623 313 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 ATP4BP51164 291 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 ARSDP51689 593 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 ATXN3P54252 364 aaPredicted RBP16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 HERVK_113P63132 956 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 NFE2Q16621 373 aaPredicted RBP16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 ALFQ53S48 1182 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 IL23RQ5VWK5 629 aa16.07■□□□□ 0.16
CHMP1A-202ENST00000535997 RPS27LQ71UM5 84 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms