RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TRABDQ9H4I3 376 aa21.31■■□□□ 1
VPS28-212ENST00000530836 TBC1D17Q9HA65 648 aa21.31■■□□□ 1
VPS28-212ENST00000530836 HACD3Q9P035 362 aa21.31■■□□□ 1
VPS28-212ENST00000530836 SMG5Q9UPR3 1016 aaKnown RBP21.31■■□□□ 1
VPS28-212ENST00000530836 MRPS17Q9Y2R5 130 aaKnown RBP21.31■■□□□ 1
VPS28-212ENST00000530836 PIAS1O75925 651 aa21.3■■□□□ 1
VPS28-212ENST00000530836 PDGFBP01127 241 aaPredicted RBP21.3■■□□□ 1
VPS28-212ENST00000530836 MT-ND3P03897 115 aa21.3■■□□□ 1
VPS28-212ENST00000530836 CISD3P0C7P0 127 aa21.3■■□□□ 1
VPS28-212ENST00000530836 GP5P40197 560 aa21.3■■□□□ 1
VPS28-212ENST00000530836 OPRD1P41143 372 aa21.3■■□□□ 1
VPS28-212ENST00000530836 ATP1A2P50993 1020 aa21.3■■□□□ 1
VPS28-212ENST00000530836 GALK1P51570 392 aa21.3■■□□□ 1
VPS28-212ENST00000530836 PDE1BQ01064 536 aa21.3■■□□□ 1
VPS28-212ENST00000530836 BCL2L1Q07817 233 aa21.3■■□□□ 1
VPS28-212ENST00000530836 C22orf39Q6P5X5 142 aa21.3■■□□□ 1
VPS28-212ENST00000530836 ETFBKMTQ8IXQ9 262 aa21.3■■□□□ 1
VPS28-212ENST00000530836 NAT16Q8N8M0 369 aa21.3■■□□□ 1
VPS28-212ENST00000530836 CALML6Q8TD86 181 aa21.3■■□□□ 1
VPS28-212ENST00000530836 MZB1Q8WU39 189 aa21.3■■□□□ 1
VPS28-212ENST00000530836 SPOCK2Q92563 424 aa21.3■■□□□ 1
VPS28-212ENST00000530836 NELL2Q99435 816 aa21.3■■□□□ 1
VPS28-212ENST00000530836 SELENOSQ9BQE4 189 aa21.3■■□□□ 1
VPS28-212ENST00000530836 CAPS2Q9BXY5 557 aa21.3■■□□□ 1
VPS28-212ENST00000530836 MFSD1Q9H3U5 465 aa21.3■■□□□ 1
VPS28-212ENST00000530836 ATP13A3Q9H7F0 1226 aa21.3■■□□□ 1
VPS28-212ENST00000530836 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.3■■□□□ 1
VPS28-212ENST00000530836 PCDHGC4Q9Y5F7 938 aa21.3■■□□□ 1
VPS28-212ENST00000530836 COL4A2P08572 1712 aa21.3■■□□□ 1
VPS28-212ENST00000530836 ANKRD66B4E2M5 251 aa21.29■■□□□ 1
VPS28-212ENST00000530836 STK25O00506 426 aa21.29■■□□□ 1
VPS28-212ENST00000530836 FZD6O60353 706 aa21.29■■□□□ 1
VPS28-212ENST00000530836 PRLP01236 227 aa21.29■■□□□ 1
VPS28-212ENST00000530836 SRPRAP08240 638 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 EIF2DP41214 584 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 GRIA4P48058 902 aa21.29■■□□□ 1
VPS28-212ENST00000530836 SLC6A11P48066 632 aa21.29■■□□□ 1
VPS28-212ENST00000530836 RAD51Q06609 339 aa21.29■■□□□ 1
VPS28-212ENST00000530836 ILF2Q12905 390 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 GALNT3Q14435 633 aa21.29■■□□□ 1
VPS28-212ENST00000530836 UGP2Q16851 508 aa21.29■■□□□ 1
VPS28-212ENST00000530836 HSP90AA5PQ58FG0 334 aa21.29■■□□□ 1
VPS28-212ENST00000530836 ATXN7L2Q5T6C5 722 aaPredicted RBP21.29■■□□□ 1
VPS28-212ENST00000530836 ARMC12Q5T9G4 340 aa21.29■■□□□ 1
VPS28-212ENST00000530836 TEDDM1Q5T9Z0 273 aa21.29■■□□□ 1
VPS28-212ENST00000530836 NAIF1Q69YI7 327 aaPredicted RBP21.29■■□□□ 1
VPS28-212ENST00000530836 ESRP1Q6NXG1 681 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 PACS1Q6VY07 963 aa21.29■■□□□ 1
VPS28-212ENST00000530836 BMP8AQ7Z5Y6 402 aa21.29■■□□□ 1
VPS28-212ENST00000530836 C12orf40Q86WS4 652 aa21.29■■□□□ 1
VPS28-212ENST00000530836 CNTN4Q8IWV2 1026 aa21.29■■□□□ 1
VPS28-212ENST00000530836 LMNTD2Q8IXW0 634 aa21.29■■□□□ 1
VPS28-212ENST00000530836 UNC5BQ8IZJ1 945 aa21.29■■□□□ 1
VPS28-212ENST00000530836 ZNF778Q96MU6 729 aa21.29■■□□□ 1
VPS28-212ENST00000530836 P2RY13Q9BPV8 354 aa21.29■■□□□ 1
VPS28-212ENST00000530836 FAM167BQ9BTA0 163 aa21.29■■□□□ 1
VPS28-212ENST00000530836 TM6SF2Q9BZW4 377 aa21.29■■□□□ 1
VPS28-212ENST00000530836 A0A1W2PQ67 120 aa21.29■■□□□ 1
VPS28-212ENST00000530836 PRPF4O43172 522 aaKnown RBP eCLIP21.29■■□□□ 1
VPS28-212ENST00000530836 TIMM44O43615 452 aa21.29■■□□□ 1
VPS28-212ENST00000530836 ZNF821O75541 412 aaPredicted RBP21.29■■□□□ 1
VPS28-212ENST00000530836 SERPINA4P29622 427 aa21.29■■□□□ 1
VPS28-212ENST00000530836 MDH1P40925 334 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 CTSOP43234 321 aaPredicted RBP21.29■■□□□ 1
VPS28-212ENST00000530836 ARCN1P48444 511 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 CSE1LP55060 971 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 TRAF2Q12933 501 aa21.29■■□□□ 1
VPS28-212ENST00000530836 PON2Q15165 354 aa21.29■■□□□ 1
VPS28-212ENST00000530836 CNGA3Q16281 694 aa21.29■■□□□ 1
VPS28-212ENST00000530836 DGKKQ5KSL6 1271 aa21.29■■□□□ 1
VPS28-212ENST00000530836 TIFABQ6ZNK6 161 aa21.29■■□□□ 1
VPS28-212ENST00000530836 ZNF687Q8N1G0 1237 aa21.29■■□□□ 1
VPS28-212ENST00000530836 BLOC1S5Q8TDH9 187 aa21.29■■□□□ 1
VPS28-212ENST00000530836 STYXQ8WUJ0 223 aa21.29■■□□□ 1
VPS28-212ENST00000530836 PBXIP1Q96AQ6 731 aa21.29■■□□□ 1
VPS28-212ENST00000530836 CENPTQ96BT3 561 aa21.29■■□□□ 1
VPS28-212ENST00000530836 RPL10LQ96L21 214 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 NSMCE3Q96MG7 304 aa21.29■■□□□ 1
VPS28-212ENST00000530836 CPEB1Q9BZB8 566 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 FBRSL1Q9HCM7 1045 aaKnown RBP21.29■■□□□ 1
VPS28-212ENST00000530836 LTB4R2Q9NPC1 389 aa21.29■■□□□ 1
VPS28-212ENST00000530836 ERVW-1Q9UQF0 538 aa21.29■■□□□ 1
VPS28-212ENST00000530836 TICRRQ7Z2Z1 1910 aa21.29■■□□□ 1
VPS28-212ENST00000530836 SLC7A4O43246 635 aa21.28■■□□□ 1
VPS28-212ENST00000530836 HTRA2O43464 458 aaPredicted RBP21.28■■□□□ 1
VPS28-212ENST00000530836 LDB2O43679 373 aa21.28■■□□□ 1
VPS28-212ENST00000530836 SIN3BO75182 1162 aa21.28■■□□□ 1
VPS28-212ENST00000530836 TULP3O75386 442 aa21.28■■□□□ 1
VPS28-212ENST00000530836 VAPBO95292 243 aa21.28■■□□□ 1
VPS28-212ENST00000530836 PGLSO95336 258 aa21.28■■□□□ 1
VPS28-212ENST00000530836 POP4O95707 220 aaKnown RBP21.28■■□□□ 1
VPS28-212ENST00000530836 SPRP35270 261 aaPredicted RBP21.28■■□□□ 1
VPS28-212ENST00000530836 STK19P49842 368 aaPredicted RBP21.28■■□□□ 1
VPS28-212ENST00000530836 ACVR1Q04771 509 aa21.28■■□□□ 1
VPS28-212ENST00000530836 THOC5Q13769 683 aaKnown RBP21.28■■□□□ 1
VPS28-212ENST00000530836 EIF4HQ15056 248 aaKnown RBP21.28■■□□□ 1
VPS28-212ENST00000530836 TAF1AQ15573 450 aaPredicted RBP21.28■■□□□ 1
VPS28-212ENST00000530836 ACCSLQ4AC99 568 aa21.28■■□□□ 1
VPS28-212ENST00000530836 PREPLQ4J6C6 727 aaPredicted RBP21.28■■□□□ 1
VPS28-212ENST00000530836 CARD16Q5EG05 197 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms