RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	4.77	□□□□□ -1.65
CD44-223	ENST00000526553	PCGF5	Q86SE9	256 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	NOXA1	Q86UR1	476 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	ESX1	Q8N693	406 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	ZNF114	Q8NC26	417 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	ST8SIA4	Q92187	359 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	RNF125	Q96EQ8	232 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	PPM1M	Q96MI6	270 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	DUX5	Q96PT3	197 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	HEMGN	Q9BXL5	484 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	ZHX3	Q9H4I2	956 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	DDX31	Q9H8H2	851 aa	Known RBP	4.77	□□□□□ -1.65
CD44-223	ENST00000526553	DDX4	Q9NQI0	724 aa	Known RBP	4.77	□□□□□ -1.65
CD44-223	ENST00000526553	KCND2	Q9NZV8	630 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	FAM96B	Q9Y3D0	163 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553	NFS1	Q9Y697	457 aa		4.77	□□□□□ -1.65
CD44-223	ENST00000526553		A0A1W2PQM1	296 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	PLSCR5	A0PG75	271 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	SMTNL1	A8MU46	457 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	NPIPB11	E5RHQ5	1161 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	F9	P00740	461 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	TF	P02787	698 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	HNRNPH1	P31943	449 aa	Known RBP	4.76	□□□□□ -1.65
CD44-223	ENST00000526553	MAN1A1	P33908	653 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	CASP2	P42575	452 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	KRTAP10-9	P60411	292 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	PTP4A2	Q12974	167 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	DDX10	Q13206	875 aa	Known RBP	4.76	□□□□□ -1.65
CD44-223	ENST00000526553	NEDD9	Q14511	834 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	CALCRL	Q16602	461 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	SETMAR	Q53H47	684 aa	Predicted RBP	4.76	□□□□□ -1.65
CD44-223	ENST00000526553	INTS11	Q5TA45	600 aa	Known RBP	4.76	□□□□□ -1.65
CD44-223	ENST00000526553	SLC9C2	Q5TAH2	1124 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	SPSB3	Q6PJ21	355 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	CPLX2	Q6PUV4	134 aa	Known RBP	4.76	□□□□□ -1.65
CD44-223	ENST00000526553	CLEC4G	Q6UXB4	293 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	ZC3HC1	Q86WB0	502 aa	Known RBP	4.76	□□□□□ -1.65
CD44-223	ENST00000526553	PGBD5	Q8N414	524 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	AGBL3	Q8NEM8	1001 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	PPHLN1	Q8NEY8	458 aa	Known RBP	4.76	□□□□□ -1.65
CD44-223	ENST00000526553	BEST2	Q8NFU1	509 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	LILRB1	Q8NHL6	650 aa	Predicted RBP	4.76	□□□□□ -1.65
CD44-223	ENST00000526553	NFKBID	Q8NI38	313 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	KLHL29	Q96CT2	875 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	ADGRG7	Q96K78	797 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	KLHL15	Q96M94	604 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	MPHOSPH8	Q99549	860 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	H2AFJ	Q9BTM1	129 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	C1QTNF4	Q9BXJ3	329 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	GAREM1	Q9H706	876 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	VEZT	Q9HBM0	779 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	SLCO3A1	Q9UIG8	710 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	CDC14A	Q9UNH5	594 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	CYP46A1	Q9Y6A2	500 aa		4.76	□□□□□ -1.65
CD44-223	ENST00000526553	DENND3	A2RUS2	1198 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	LDLRAD4	O15165	306 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	BCAT2	O15382	392 aa	Predicted RBP	4.75	□□□□□ -1.65
CD44-223	ENST00000526553	EPB41L2	O43491	1005 aa	Known RBP	4.75	□□□□□ -1.65
CD44-223	ENST00000526553	ZIC3	O60481	467 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	HOXB5	P09067	269 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	PAFAH1B1	P43034	410 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	RAD23B	P54727	409 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	RPL36A	P83881	106 aa	Known RBP	4.75	□□□□□ -1.65
CD44-223	ENST00000526553	COASY	Q13057	564 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	SNTA1	Q13424	505 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	SLC39A14	Q15043	492 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	PPP2R5B	Q15173	497 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	EFNB3	Q15768	340 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	AMZ1	Q400G9	498 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	SLC9B1	Q4ZJI4	515 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	SGO1	Q5FBB7	561 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	WDR78	Q5VTH9	848 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	RHBDF2	Q6PJF5	856 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	LINGO2	Q7L985	606 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	DHX40	Q8IX18	779 aa	Known RBP	4.75	□□□□□ -1.65
CD44-223	ENST00000526553	MTBP	Q96DY7	904 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	KIF1BP	Q96EK5	621 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	SCMH1	Q96GD3	660 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	ZNF570	Q96NI8	536 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	OR1F2P	Q96R84	312 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	UNC45A	Q9H3U1	944 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	PLEKHA4	Q9H4M7	779 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	ZNF556	Q9HAH1	456 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	MAGEE1	Q9HCI5	957 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	SWAP70	Q9UH65	585 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	SARDH	Q9UL12	918 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	A4GNT	Q9UNA3	340 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	CRYL1	Q9Y2S2	319 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	SCIN	Q9Y6U3	715 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	NOTCH4	Q99466	2003 aa		4.75	□□□□□ -1.65
CD44-223	ENST00000526553	hDV102S1	A0JD36	115 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	AGR2	O95994	175 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	ABCD3	P28288	659 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	SSTR2	P30874	369 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	ABCD1	P33897	745 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	COMP	P49747	757 aa	Predicted RBP	4.74	□□□□□ -1.65
CD44-223	ENST00000526553	DDR1	Q08345	913 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	LMOD3	Q0VAK6	560 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	DLG1	Q12959	904 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	MTSS1L	Q765P7	747 aa		4.74	□□□□□ -1.65

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