RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PSMB9P28065 219 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 CHN2P52757 468 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 ARHGAP17Q68EM7 881 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 YAF2Q8IY57 180 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 PQLC1Q8N2U9 271 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 OR7D4Q8NG98 312 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 OR4L1Q8NH43 312 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 CCDC28BQ9BUN5 200 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 XYLT2Q9H1B5 865 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 NOL11Q9H8H0 719 aaKnown RBP11.75□□□□□ -0.53
SYNPO-204ENST00000519664 PSAT1Q9Y617 370 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 NUP98P52948 1817 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 CICQ96RK0 1608 aaPredicted RBP11.75□□□□□ -0.53
SYNPO-204ENST00000519664 TAF1P21675 1872 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 PEX2P28328 305 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 SERPINB10P48595 397 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 NUP107P57740 925 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 CCDC15Q0P6D6 951 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 CRY1Q16526 586 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 FAM151BQ6UXP7 276 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 TRMT11Q7Z4G4 463 aaKnown RBP11.75□□□□□ -0.53
SYNPO-204ENST00000519664 NIPA2Q8N8Q9 360 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 CLHC1Q8NHS4 586 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 HAPLN2Q9GZV7 340 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 CYTH4Q9UIA0 394 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 MYH3P11055 1940 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 COL14A1Q05707 1796 aaKnown RBP11.75□□□□□ -0.53
SYNPO-204ENST00000519664 RPL17P18621 184 aaKnown RBP11.75□□□□□ -0.53
SYNPO-204ENST00000519664 ZNF135P52742 658 aaPredicted RBP11.75□□□□□ -0.53
SYNPO-204ENST00000519664 SEMG2Q02383 582 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 KLF1Q13351 362 aaPredicted RBP11.75□□□□□ -0.53
SYNPO-204ENST00000519664 DPYSL2Q16555 572 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 CLEC20AQ6ZU45 233 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 ZFAND2BQ8WV99 257 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 SELENOMQ8WWX9 145 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 PSMG2Q969U7 264 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 COMMD8Q9NX08 183 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 ZNF180Q9UJW8 692 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 INVSQ9Y283 1065 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 DERAQ9Y315 318 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 SNX8Q9Y5X2 465 aa11.75□□□□□ -0.53
SYNPO-204ENST00000519664 E9PAM4 449 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 LRATO95237 230 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 GPC1P35052 558 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 IDH3AP50213 366 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 RPL38P63173 70 aaKnown RBP11.74□□□□□ -0.53
SYNPO-204ENST00000519664 VPS26BQ4G0F5 336 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 HECTD2Q5U5R9 776 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 ELMSAN1Q6PJG2 1045 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 ZDHHC13Q8IUH4 622 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 HERC6Q8IVU3 1022 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 PGBD3Q8N328 593 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 UCMAQ8WVF2 138 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 SPATA16Q9BXB7 569 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 RNF208Q9H0X6 261 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 SLC7A8Q9UHI5 535 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 FZD10Q9ULW2 581 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 U3KQV3 271 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 KIAA0100Q14667 2235 aaKnown RBP11.74□□□□□ -0.53
SYNPO-204ENST00000519664 NRP1O14786 923 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 HOXA2O43364 376 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 FAM45BPQ6NSW5 357 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 TMEM110Q86TL2 294 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 FAM45AQ8TCE6 357 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 ZFRQ96KR1 1074 aaKnown RBP11.74□□□□□ -0.53
SYNPO-204ENST00000519664 PPM1MQ96MI6 270 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 SYT17Q9BSW7 474 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 ADAM7Q9H2U9 754 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 RMND5AQ9H871 391 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 S100A14Q9HCY8 104 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 HMX1Q9NP08 348 aaPredicted RBP11.74□□□□□ -0.53
SYNPO-204ENST00000519664 DNMT3LQ9UJW3 386 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 CLCA2Q9UQC9 943 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 TEX264Q9Y6I9 313 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 KIF13AQ9H1H9 1805 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 NRP2O60462 931 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 TBL1XO60907 577 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 IPO13O94829 963 aaKnown RBP11.74□□□□□ -0.53
SYNPO-204ENST00000519664 TGDSO95455 350 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 RAP1GDS1P52306 607 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 RAD23AP54725 363 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 MRPS15P82914 257 aaKnown RBP11.74□□□□□ -0.53
SYNPO-204ENST00000519664 CBX3Q13185 183 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 ATP1A4Q13733 1029 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 NCBP2-AS2Q69YL0 99 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 SPESP1Q6UW49 350 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 CLYBLQ8N0X4 340 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 SLC35F5Q8WV83 523 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 TMEM159Q96B96 161 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 LINGO1Q96FE5 620 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 GBA3Q9H227 469 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 ZDHHC6Q9H6R6 413 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 CIDEBQ9UHD4 219 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 SLC25A13Q9UJS0 675 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 AGO1Q9UL18 857 aaKnown RBP11.74□□□□□ -0.53
SYNPO-204ENST00000519664 TMEM114B3SHH9 223 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 AGRPO00253 132 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 TRIM38O00635 465 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 TCEA3O75764 348 aa11.74□□□□□ -0.53
SYNPO-204ENST00000519664 S100A5P33763 92 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms