RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 TRAF2Q12933 501 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 PRPSAP1Q14558 356 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 P3H1Q32P28 736 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 PLK5Q496M5 336 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 USP39Q53GS9 565 aaKnown RBP10.11□□□□□ -0.79
NUP54-203ENST00000504173 TTC27Q6P3X3 843 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 CCDC137Q6PK04 289 aaKnown RBP10.11□□□□□ -0.79
NUP54-203ENST00000504173 USP30Q70CQ3 517 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 FAM124AQ86V42 546 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 AADATQ8N5Z0 425 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 ATL2Q8NHH9 583 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 GRK7Q8WTQ7 553 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 RTP4Q96DX8 246 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 IMP4Q96G21 291 aaKnown RBP10.11□□□□□ -0.79
NUP54-203ENST00000504173 SPACA7Q96KW9 195 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 ZNF641Q96N77 438 aaPredicted RBP10.11□□□□□ -0.79
NUP54-203ENST00000504173 FCRL5Q96RD9 977 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 RBM15Q96T37 977 aaKnown RBP eCLIP10.11□□□□□ -0.793e-11■■■■■ 43.2
NUP54-203ENST00000504173 SUV39H2Q9H5I1 410 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 CD93Q9NPY3 652 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 ITM2CQ9NQX7 267 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 USP36Q9P275 1121 aaKnown RBP10.11□□□□□ -0.79
NUP54-203ENST00000504173 CYP8B1Q9UNU6 501 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 RAXQ9Y2V3 346 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 PCDHGC4Q9Y5F7 938 aa10.11□□□□□ -0.79
NUP54-203ENST00000504173 A0A1W2PQ67 120 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 CAPN8A6NHC0 703 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 C16orf96A6NNT2 1141 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 CCDC188H7C350 402 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 HTRA2O43464 458 aaPredicted RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 ZNF500O60304 480 aaPredicted RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 PMPCBO75439 489 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 MMP2P08253 660 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 ETS1P14921 441 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 PSMB4P28070 264 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 OXTRP30559 389 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 DRD3P35462 400 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 P2RY2P41231 377 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 NEK3P51956 506 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 GEMP55040 296 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 SIM1P81133 766 aaPredicted RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 TUBB2AQ13885 445 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 SLC14A2Q15849 920 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 PCSK7Q16549 785 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 WHAMMP3Q1A5X7 153 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 ZNF423Q2M1K9 1284 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 MAP7D1Q3KQU3 841 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 ARMC12Q5T9G4 340 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 FBXL19Q6PCT2 694 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 BRAT1Q6PJG6 821 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 ERN2Q76MJ5 926 aaKnown RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 PARS2Q7L3T8 475 aaKnown RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 PIP4P1Q86T03 277 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 PRUNE1Q86TP1 453 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 PRPF39Q86UA1 669 aaKnown RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 KLHL7Q8IXQ5 586 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 CHCHD4Q8N4Q1 142 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 TAB3Q8N5C8 712 aaPredicted RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 SPATA22Q8NHS9 363 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 HCAR2Q8TDS4 363 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 RLN3Q8WXF3 142 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 VOPP1Q96AW1 172 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 NSMCE3Q96MG7 304 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 RUNDC3BQ96NL0 473 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 PPP1R2P1Q96PQ5 205 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 TUBB2BQ9BVA1 445 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 HDAC8Q9BY41 377 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 DDX47Q9H0S4 455 aaKnown RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 NEUROG2Q9H2A3 272 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 UBP1Q9NZI7 540 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 PAK5Q9P286 719 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 DKK3Q9UBP4 350 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 SERGEFQ9UGK8 458 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 FAM153AQ9UHL3 310 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 FZD4Q9ULV1 537 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 INVSQ9Y283 1065 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 PCDHB9Q9Y5E1 797 aa10.1□□□□□ -0.79
NUP54-203ENST00000504173 URB1O60287 2271 aaKnown RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 SPTAN1Q13813 2472 aaKnown RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 ASCC3Q8N3C0 2202 aaKnown RBP10.1□□□□□ -0.79
NUP54-203ENST00000504173 ANKRD36A6QL64 1941 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 A0A087WV48 116 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 IGHV1OR15-9A0A0B4J2B8 117 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 TSPAN11A1L157 253 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 GOLGA6CA6NDK9 693 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 GOLGA6BA6NDN3 693 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 TRAFD1O14545 582 aaPredicted RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 SLC7A4O43246 635 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 MAP3K13O43283 966 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 ANXA9O76027 345 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 PGLSO95336 258 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 ECEL1O95672 775 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 GAS8O95995 478 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 MT-CYBP00156 380 aaPredicted RBP10.09□□□□□ -0.79
NUP54-203ENST00000504173 CPP00450 1065 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 IGLV3-19P01714 112 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 ZSCAN5DPP0CG00 497 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 GOLGA6DP0CG33 693 aa10.09□□□□□ -0.79
NUP54-203ENST00000504173 ATXN8OSP0DMR3 200 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms