RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 OSBPL8Q9BZF1 889 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 DNPEPQ9ULA0 475 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 PACSIN2Q9UNF0 486 aaPredicted RBP16.47■□□□□ 0.23
SF3A1-209ENST00000496189 CA5BQ9Y2D0 317 aa16.47■□□□□ 0.23
SF3A1-209ENST00000496189 TRPM6Q9BX84 2022 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 TTC24A2A3L6 582 aaPredicted RBP16.46■□□□□ 0.23
SF3A1-209ENST00000496189 H3BM21 787 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 KCNK1O00180 336 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 SH3BP5O60239 455 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 KIF5CO60282 957 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 PYGMP11217 842 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 C6P13671 934 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 CLDN2P57739 230 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 IFI35P80217 286 aaPredicted RBP16.46■□□□□ 0.23
SF3A1-209ENST00000496189 MEI1Q5TIA1 1274 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 NPNTQ6UXI9 565 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 BBS12Q6ZW61 710 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 DPPA4Q7L190 304 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 ABI3BPQ7Z7G0 1075 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 PIP4P1Q86T03 277 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 OR13H1Q8NG92 308 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 SPOCK2Q92563 424 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 ALG3Q92685 438 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 VOPP1Q96AW1 172 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 HEMGNQ9BXL5 484 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 RAI2Q9Y5P3 530 aa16.46■□□□□ 0.23
SF3A1-209ENST00000496189 ANKRD36A6QL64 1941 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 DDX3YO15523 660 aaKnown RBP16.45■□□□□ 0.22
SF3A1-209ENST00000496189 SPINT1O43278 529 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 PGLSO95336 258 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 PRKCGP05129 697 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 HLA-DQB2P05538 268 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 ITIH2P19823 946 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 YPEL5P62699 121 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 IL9RQ01113 521 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 TRAF2Q12933 501 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 FGL2Q14314 439 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 ACOX1Q15067 660 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 LLGL1Q15334 1064 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 SEL1L2Q5TEA6 688 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 ALG1LQ6GMV1 187 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 ATL2Q8NHH9 583 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 HAUS1Q96CS2 278 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 IFT43Q96FT9 208 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 OLFM3Q96PB7 478 aa16.45■□□□□ 0.22
SF3A1-209ENST00000496189 TRMT1Q9NXH9 659 aaKnown RBP16.45■□□□□ 0.22
SF3A1-209ENST00000496189 POM121BA6NF01 834 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 HACD1B0YJ81 288 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 APOC4-APOC2K7ER74 178 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 ZNF189O75820 626 aaPredicted RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 STK10O94804 968 aaKnown RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 APOC2P02655 101 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 HTR1BP28222 390 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 EPHA8P29322 1005 aaPredicted RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 VIPR1P32241 457 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 RXRGP48443 463 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 RPL26P61254 145 aaKnown RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 SIM1P81133 766 aaPredicted RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 DSC2Q02487 901 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 PDE1CQ14123 709 aaPredicted RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 TRIP6Q15654 476 aaKnown RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 PRAMEF14Q5SWL7 426 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 CCDC70Q6NSX1 233 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 ZC3H18Q86VM9 953 aaKnown RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 PARGQ86W56 976 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 ZSWIM9Q86XI8 627 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 SPATS2Q86XZ4 545 aaKnown RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 REXO1L1PQ8IX06 675 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 TTC13Q8NBP0 860 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 LRRN4Q8WUT4 740 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 CENPTQ96BT3 561 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 AGAP3Q96P47 875 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 VAT1Q99536 393 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 IL12RB2Q99665 862 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 ADGRE3Q9BY15 652 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 DNAJC28Q9NX36 388 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 B4GALT6Q9UBX8 382 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 PCOLCE2Q9UKZ9 415 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 RPL26L1Q9UNX3 145 aaKnown RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 APOBEC2Q9Y235 224 aaKnown RBP16.44■□□□□ 0.22
SF3A1-209ENST00000496189 COQ6Q9Y2Z9 468 aa16.44■□□□□ 0.22
SF3A1-209ENST00000496189 H7C0C1 242 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 PSMD11O00231 422 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 RAD51BO15315 384 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 ALPPL2P10696 532 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 CD86P42081 329 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 ATP5OP48047 213 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 HNRNPKP61978 463 aaKnown RBP eCLIP16.43■□□□□ 0.22
SF3A1-209ENST00000496189 ZNF211Q13398 564 aaPredicted RBP16.43■□□□□ 0.22
SF3A1-209ENST00000496189 AGERQ15109 404 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 IRF4Q15306 451 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 DENND2CQ68D51 928 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 LIPIQ6XZB0 460 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 BTN2A2Q8WVV5 523 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 SCRN2Q96FV2 425 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 BMFQ96LC9 184 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 KLF6Q99612 283 aaPredicted RBP16.43■□□□□ 0.22
SF3A1-209ENST00000496189 TDRD1Q9BXT4 1180 aaKnown RBP16.43■□□□□ 0.22
SF3A1-209ENST00000496189 CARD9Q9H257 536 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 PCDH9Q9HC56 1237 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms