RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 NAT8LQ8N9F0 302 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NRG4Q8WWG1 115 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SKA1Q96BD8 255 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CERS2Q96G23 380 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RPL10LQ96L21 214 aaKnown RBP10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MIPEPQ99797 713 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 EFCAB1Q9HAE3 211 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NMUR1Q9HB89 426 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HMG20AQ9NP66 347 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FZD10Q9ULW2 581 aa10.81□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 C16orf96A6NNT2 1141 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NDUFS3O75489 264 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 LRG1P02750 347 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MPP1Q00013 466 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RNF219Q5W0B1 726 aaPredicted RBP10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 C14orf80Q86SX3 495 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DDX53Q86TM3 631 aaKnown RBP10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PHC3Q8NDX5 983 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KCTD4Q8WVF5 259 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KANSL3Q9P2N6 904 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DERAQ9Y315 318 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PCDHGC4Q9Y5F7 938 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 V9GYQ6 96 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SF3B1O75533 1304 aaKnown RBP eCLIP10.8□□□□□ -0.681e-8■■■■■ 28.9
MSH5-SAPCD1-207ENST00000493662 J3KR12 359 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CHADO15335 359 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 OAS1P00973 400 aaKnown RBP10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ME2P23368 584 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NMBRP28336 390 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CDH17Q12864 832 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 IKBKEQ14164 716 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PTK2BQ14289 1009 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CARTPTQ16568 116 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ARHGAP17Q68EM7 881 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TMEM214Q6NUQ4 689 aaKnown RBP10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ESRP1Q6NXG1 681 aaKnown RBP10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SETD3Q86TU7 594 aaPredicted RBP10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PLD3Q8IV08 490 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 BHLHE22Q8NFJ8 381 aaPredicted RBP10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TNIP2Q8NFZ5 429 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 OR52K2Q8NGK3 314 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GANCQ8TET4 914 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FTHL17Q9BXU8 183 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC39A8Q9C0K1 460 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FBXO44Q9H4M3 255 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PCDH12Q9NPG4 1184 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 THAP1Q9NVV9 213 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZNF510Q9Y2H8 683 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CLOCKO15516 846 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ANXA9O76027 345 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RALBP11234 206 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CYBAP13498 195 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CPA3P15088 417 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HDCP19113 662 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PTPN3P26045 913 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CRABP2P29373 138 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RAB15P59190 212 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 INPP5AQ14642 412 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 UPP1Q16831 310 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NAPRTQ6XQN6 538 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RPS27LQ71UM5 84 aaKnown RBP10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SUN5Q8TC36 379 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PANX3Q96QZ0 392 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TTPALQ9BTX7 342 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SMG9Q9H0W8 520 aaKnown RBP10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRIM39Q9HCM9 518 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TMEM30AQ9NV96 361 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ORC6Q9Y5N6 252 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ARFGEF1Q9Y6D6 1849 aa10.8□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SIN3BO75182 1162 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HNRNPLP14866 589 aaKnown RBP eCLIP10.79□□□□□ -0.688e-8■■■□□ 16.1
MSH5-SAPCD1-207ENST00000493662 WARSP23381 471 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PTPN7P35236 360 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ATP5C1P36542 298 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CDH13P55290 713 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 WNT3AP56704 352 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 POTEHQ6S545 545 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SCIMPQ6UWF3 145 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NPWQ8N729 165 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ESAMQ96AP7 390 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 EPB41L4BQ9H329 900 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MBLAC1A4D2B0 266 aaPredicted RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 E9PAM4 449 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 EIF2S1P05198 315 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KCNE1P15382 129 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TTKP33981 857 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PTPN9P43378 593 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RECQLP46063 649 aaPredicted RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RALGPS1Q5JS13 557 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZNF598Q86UK7 904 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PDSS2Q86YH6 399 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 HMCESQ96FZ2 354 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ACBD6Q9BR61 282 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KATNBL1Q9H079 304 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PIF1Q9H611 641 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 QSER1Q2KHR3 1735 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PSMD12O00232 456 aaPredicted RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 STX7O15400 261 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RHOBTB1O94844 696 aa10.79□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GUCA1CO95843 209 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms