RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CEP41Q9BYV8 373 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 SAE1Q9UBE0 346 aaPredicted RBP18.22■□□□□ 0.51
COL9A3-214ENST00000490398 FTSJ1Q9UET6 329 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 RAI2Q9Y5P3 530 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 LAMA5O15230 3695 aa18.22■□□□□ 0.51
COL9A3-214ENST00000490398 SHROOM3Q8TF72 1996 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 A0A0A6YYK5 440 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-214ENST00000490398 ZNF487B1APH4 448 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 APOL1O14791 398 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 YKT6O15498 198 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 TNFSF14O43557 240 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 LZTS3O60299 673 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-214ENST00000490398 FZD6O60353 706 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 NEBLO76041 1014 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 RECQL5O94762 991 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-214ENST00000490398 PGLSO95336 258 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 LDOC1O95751 146 aaPredicted RBP18.21■□□□□ 0.51
COL9A3-214ENST00000490398 CPP00450 1065 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 JCHAINP01591 159 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 ALPIP09923 528 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 CCNB1P14635 433 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 CTPS1P17812 591 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 LHCGRP22888 699 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 CDKN2BP42772 138 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 LRRC14Q15048 493 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 CCDC13Q8IYE1 715 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 RBFAQ8N0V3 343 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 BBS5Q8N3I7 341 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 PIH1D2Q8WWB5 315 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 SPOCK2Q92563 424 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 FATE1Q969F0 183 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 HDAC11Q96DB2 347 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 OLFM3Q96PB7 478 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 TTLL3Q9Y4R7 772 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 ANKRD36A6QL64 1941 aa18.21■□□□□ 0.51
COL9A3-214ENST00000490398 LRRK1Q38SD2 2015 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 NPIPB15A6NHN6 443 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 C1QTNF9BB2RNN3 333 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 ENC1O14682 589 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 FFAR2O15552 330 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 SIGLEC6O43699 453 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 CSF2P04141 144 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 PCCBP05166 539 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 MMP2P08253 660 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 C1QTNF9P0C862 333 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 NME1P15531 152 aaKnown RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 PECAM1P16284 738 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 CDC25BP30305 580 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 PPIDQ08752 370 aaKnown RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 CNGA3Q16281 694 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 ALG1LQ6GMV1 187 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 TIGD7Q6NT04 549 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 SPOCD1Q6ZMY3 1216 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 RFLNAQ6ZTI6 216 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 TSPAN33Q86UF1 283 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 PARGQ86W56 976 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 DCP2Q8IU60 420 aaKnown RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 FAM174AQ8TBP5 190 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 IL12RB2Q99665 862 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 BAG1Q99933 345 aaPredicted RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 HERPUD2Q9BSE4 406 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 DESI2Q9BSY9 194 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 POLR1EQ9GZS1 481 aaKnown RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 DDX56Q9NY93 547 aaKnown RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 APOBEC2Q9Y235 224 aaKnown RBP18.2■□□□□ 0.5
COL9A3-214ENST00000490398 OR1A2Q9Y585 309 aa18.2■□□□□ 0.5
COL9A3-214ENST00000490398 K7ESM1 405 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 PSTPIP1O43586 416 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 TRIM16O95361 564 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 PRLP01236 227 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 ELFN1P0C7U0 828 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 MX2P20592 715 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 POLR2LP62875 67 aaKnown RBP18.19■□□□□ 0.5
COL9A3-214ENST00000490398 INPP5AQ14642 412 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 AGERQ15109 404 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 PROX2Q3B8N5 592 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 INAVAQ3KP66 663 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 KAZNQ674X7 775 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 C11orf63Q6NUN7 778 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 HSD11B1LQ7Z5J1 315 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 VSIG1Q86XK7 387 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 CBARPQ8N350 705 aaPredicted RBP18.19■□□□□ 0.5
COL9A3-214ENST00000490398 ZNF548Q8NEK5 533 aaPredicted RBP18.19■□□□□ 0.5
COL9A3-214ENST00000490398 COQ10AQ96MF6 247 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 MAK16Q9BXY0 300 aaKnown RBP18.19■□□□□ 0.5
COL9A3-214ENST00000490398 TRIM10Q9UDY6 481 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 ZFHX4Q86UP3 3567 aa18.19■□□□□ 0.5
COL9A3-214ENST00000490398 ARID1BQ8NFD5 2236 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-214ENST00000490398 CFAP69A5D8W1 941 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 SCAMP1O15126 338 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 HEXIM1O94992 359 aaKnown RBP18.18■□□□□ 0.5
COL9A3-214ENST00000490398 CELA2BP08218 269 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-214ENST00000490398 JUNDP17535 347 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 VIPR1P32241 457 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 HNF1BP35680 557 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 ACADVLP49748 655 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 IFI35P80217 286 aaPredicted RBP18.18■□□□□ 0.5
COL9A3-214ENST00000490398 AP1B1Q10567 949 aa18.18■□□□□ 0.5
COL9A3-214ENST00000490398 C1orf61Q13536 156 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms