RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 CGNQ9P2M7 1197 aaKnown RBP3.31□□□□□ -1.88
DEPDC1-204ENST00000489862 HSPB7Q9UBY9 170 aa3.31□□□□□ -1.88
DEPDC1-204ENST00000489862 RAB21Q9UL25 225 aa3.31□□□□□ -1.88
DEPDC1-204ENST00000489862 POMT1Q9Y6A1 747 aa3.31□□□□□ -1.88
DEPDC1-204ENST00000489862 MTUS2Q5JR59 1369 aa3.31□□□□□ -1.88
DEPDC1-204ENST00000489862 SAMD9LQ8IVG5 1584 aa3.31□□□□□ -1.88
DEPDC1-204ENST00000489862 ADGRF5Q8IZF2 1346 aa3.31□□□□□ -1.88
DEPDC1-204ENST00000489862 RICTORQ6R327 1708 aa3.31□□□□□ -1.88
DEPDC1-204ENST00000489862 MYO1GB0I1T2 1018 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 DNM1LO00429 736 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CES2O00748 559 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CCP110O43303 1012 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TULP3O75386 442 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 PMPCBO75439 489 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 BCAR3O75815 825 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 BCAS2O75934 225 aaPredicted RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 EIF2S1P05198 315 aaKnown RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TFEBP19484 476 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 PRKCHP24723 683 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 GKP32189 559 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 AMPHP49418 695 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 NPY4RP50391 375 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 FAM187BQ17R55 369 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 ANKDD1AQ495B1 522 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 Q4G0T1 1027 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TCP11X2Q5H9J9 407 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 FAM217AQ8IXS0 508 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 SPARTQ8N0X7 666 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 OTUD6BQ8N6M0 293 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 METTL25Q8N6Q8 603 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 SIRT6Q8N6T7 355 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 C11orf44Q8N8P7 122 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 ZNF606Q8WXB4 792 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 ZKSCAN4Q969J2 545 aaPredicted RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 INTS12Q96CB8 462 aaKnown RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CCDC114Q96M63 670 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 PRAM1Q96QH2 718 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CITED2Q99967 270 aaPredicted RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 NAA11Q9BSU3 229 aaPredicted RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 EFHD1Q9BUP0 239 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TRIM5Q9C035 493 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 SMARCAD1Q9H4L7 1026 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 SNTG1Q9NSN8 517 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TUBA8Q9NY65 449 aaPredicted RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 NINJ2Q9NZG7 142 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TFCP2L1Q9NZI6 479 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 KCND2Q9NZV8 630 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 FBXL5Q9UKA1 691 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 AMFRQ9UKV5 643 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TRPC5Q9UL62 973 aaPredicted RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 ZBTB1Q9Y2K1 713 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TEX14Q8IWB6 1497 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 PTPRKQ15262 1439 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 POGZQ7Z3K3 1410 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 DENND4BO75064 1496 aaPredicted RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 ADGRL1O94910 1474 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CCNB3Q8WWL7 1395 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CCDC187A0A096LP49 1063 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 OR2A25A4D2G3 310 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 UBE2Q2LH0YL09 131 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 BOLA2-SMG1P6H3BVE0 249 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TSPAN4O14817 238 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 LIASO43766 372 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 VEGFDO43915 354 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CSPG5O95196 566 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 APBB3O95704 486 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 INHBAP08476 426 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CHRM5P08912 532 aaPredicted RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 EDN2P20800 178 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 PTAFRP25105 342 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 MT3P25713 68 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 MC5RP33032 325 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 PBX1P40424 430 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 IL15P40933 162 aaPredicted RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CCR10P46092 362 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CAPZA2P47755 286 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CPA2P48052 419 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TIRAPP58753 221 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CCNIQ14094 377 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TRIP6Q15654 476 aaKnown RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 SLC39A12Q504Y0 691 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 AWAT1Q58HT5 328 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TMEM196Q5HYL7 178 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 CERCAMQ5T4B2 595 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 MEX3BQ6ZN04 569 aaKnown RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 DSG4Q86SJ6 1040 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 METTL23Q86XA0 190 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TUSC5Q8IXB3 177 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 ANKRD44Q8N8A2 993 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TRIML1Q8N9V2 468 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 PRSS3P2Q8NHM4 247 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 SLC2A12Q8TD20 617 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 WDR60Q8WVS4 1066 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 KCNE4Q8WWG9 221 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TAF4BQ92750 862 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 RSPRY1Q96DX4 576 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 PDLIM5Q96HC4 596 aaKnown RBP3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 KLHL15Q96M94 604 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 FIZ1Q96SL8 496 aa3.3□□□□□ -1.88
DEPDC1-204ENST00000489862 TUBB6Q9BUF5 446 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms