RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CTNNAL1Q9UBT7 734 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 SARDHQ9UL12 918 aa6.1□□□□□ -1.43
USP40-213ENST00000483216 LRRC9Q6ZRR7 1453 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 MAGI1Q96QZ7 1491 aaPredicted RBP6.09□□□□□ -1.43
USP40-213ENST00000483216 FHOD3Q2V2M9 1422 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 CASKIN1Q8WXD9 1431 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 TFP02787 698 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 ETFAP13804 333 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 AGAP20933 346 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 GPTP24298 496 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 ITGB8P26012 769 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 GABRB2P47870 512 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 FOXD4Q12950 439 aaPredicted RBP6.09□□□□□ -1.43
USP40-213ENST00000483216 GRIK3Q13003 919 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 ITGADQ13349 1161 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 ZNF324BQ6AW86 544 aaPredicted RBP6.09□□□□□ -1.43
USP40-213ENST00000483216 ACAD10Q6JQN1 1059 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 LRRC8EQ6NSJ5 796 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 INO80CQ6PI98 192 aaPredicted RBP6.09□□□□□ -1.43
USP40-213ENST00000483216 DLK2Q6UY11 383 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 ARMC8Q8IUR7 673 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 TCP11L2Q8N4U5 519 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 FBXL8Q96CD0 374 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 KLHL29Q96CT2 875 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 RRP36Q96EU6 259 aaKnown RBP6.09□□□□□ -1.43
USP40-213ENST00000483216 BBS4Q96RK4 519 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 H2AFJQ9BTM1 129 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 PREBQ9HCU5 417 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 A4GNTQ9UNA3 340 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 TMEM98Q9Y2Y6 226 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 FAM96BQ9Y3D0 163 aa6.09□□□□□ -1.43
USP40-213ENST00000483216 EIF4G3O43432 1585 aaKnown RBP6.09□□□□□ -1.43
USP40-213ENST00000483216 PBRM1Q86U86 1689 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 TRIP12Q14669 1992 aaPredicted RBP6.08□□□□□ -1.44
USP40-213ENST00000483216 LINC01553A4QN01 128 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 NPIPB11E5RHQ5 1161 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 TNFSF14O43557 240 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 EIF5BO60841 1220 aaKnown RBP6.08□□□□□ -1.44
USP40-213ENST00000483216 CH25HO95992 272 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 MMP2P08253 660 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 HOXB6P17509 224 aaKnown RBP6.08□□□□□ -1.44
USP40-213ENST00000483216 CD58P19256 250 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 ABCD1P33897 745 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 KIF5AQ12840 1032 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 RUSC1-AS1Q66K80 236 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 NADSYN1Q6IA69 706 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 H1FNTQ75WM6 255 aaPredicted RBP6.08□□□□□ -1.44
USP40-213ENST00000483216 NOXA1Q86UR1 476 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 DHX40Q8IX18 779 aaKnown RBP6.08□□□□□ -1.44
USP40-213ENST00000483216 NAXEQ8NCW5 288 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 SEC62Q99442 399 aaKnown RBP6.08□□□□□ -1.44
USP40-213ENST00000483216 GLIS2Q9BZE0 524 aaPredicted RBP6.08□□□□□ -1.44
USP40-213ENST00000483216 PLEKHA4Q9H4M7 779 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 BRF2Q9HAW0 419 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 SAMD9Q5K651 1589 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 FMN1Q68DA7 1419 aa6.08□□□□□ -1.44
USP40-213ENST00000483216 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.07□□□□□ -1.44
USP40-213ENST00000483216 TCERG1O14776 1098 aaKnown RBP6.07□□□□□ -1.44
USP40-213ENST00000483216 LDLRAD4O15165 306 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 HSPA12AO43301 675 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 PAPSS2O95340 614 aaPredicted RBP6.07□□□□□ -1.44
USP40-213ENST00000483216 PIGAP37287 484 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 PPP2R5BQ15173 497 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 ASIC2Q16515 512 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 TCTN1Q2MV58 587 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 SGO1Q5FBB7 561 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 CRELD2Q6UXH1 353 aaPredicted RBP6.07□□□□□ -1.44
USP40-213ENST00000483216 ZCCHC9Q8N567 271 aaKnown RBP6.07□□□□□ -1.44
USP40-213ENST00000483216 TMED6Q8WW62 240 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 ERGIC1Q969X5 290 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 ZUFSPQ96AP4 578 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 NR1H4Q96RI1 486 aaPredicted RBP6.07□□□□□ -1.44
USP40-213ENST00000483216 FIZ1Q96SL8 496 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 MAGEE1Q9HCI5 957 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 DDX4Q9NQI0 724 aaKnown RBP6.07□□□□□ -1.44
USP40-213ENST00000483216 CISD1Q9NZ45 108 aaKnown RBP6.07□□□□□ -1.44
USP40-213ENST00000483216 NAALADL1Q9UQQ1 740 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 SCINQ9Y6U3 715 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 SYNJ2O15056 1496 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 SNAPC4Q5SXM2 1469 aa6.07□□□□□ -1.44
USP40-213ENST00000483216 ADAMTS12P58397 1594 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 KDM3AQ9Y4C1 1321 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 TTC36A6NLP5 189 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 KRTAP29-1A8MX34 341 aaPredicted RBP6.06□□□□□ -1.44
USP40-213ENST00000483216 ACOT8O14734 319 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 TGFB3P10600 412 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 FGF3P11487 239 aaPredicted RBP6.06□□□□□ -1.44
USP40-213ENST00000483216 EPHA8P29322 1005 aaPredicted RBP6.06□□□□□ -1.44
USP40-213ENST00000483216 PDLIM4P50479 330 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 ART1P52961 327 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 NEDD9Q14511 834 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 PPP6R3Q5H9R7 873 aaPredicted RBP6.06□□□□□ -1.44
USP40-213ENST00000483216 FAM69BQ5VUD6 431 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 CREB3L2Q70SY1 520 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 SCCPDHQ8NBX0 429 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 BEST2Q8NFU1 509 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 SAAL1Q96ER3 474 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 PPM1MQ96MI6 270 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 ZNF570Q96NI8 536 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 KRTAP1-5Q9BYS1 174 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms