RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 AOPEPQ8N6M6 819 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 EMC1Q8N766 993 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 DCAF4L2Q8NA75 395 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 ATP11CQ8NB49 1132 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 OR2T34Q8NGX1 318 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 OR14C36Q8NHC7 312 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SKA1Q96BD8 255 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 CCDC114Q96M63 670 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 PSMB7Q99436 277 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 BPIFA3Q9BQP9 254 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 C11orf70Q9BRQ4 267 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SELENOOQ9BVL4 669 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 ACE2Q9BYF1 805 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 HSD3B7Q9H2F3 369 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 TM9SF3Q9HD45 589 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SEPT11Q9NVA2 429 aaKnown RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 MPP6Q9NZW5 540 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 ADAM22Q9P0K1 906 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 PPARGC1AQ9UBK2 798 aaKnown RBP6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 HS3ST2Q9Y278 367 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 SNX10Q9Y5X0 201 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 PTPRBP23467 1997 aa6.95□□□□□ -1.3
CCDC88A-213ENST00000476903 TRPM6Q9BX84 2022 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 MAP1BP46821 2468 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 A0A0D9SEW6 157 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 ILVBLA1L0T0 632 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 ANKRD62A6NC57 917 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 SLC22A31A6NKX4 558 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 C2CD4BA6NLJ0 364 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 SMTNL1A8MU46 457 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 MCF2LO15068 1137 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 VILLO15195 856 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 FLRT2O43155 660 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 SH3BP5O60239 455 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 DFNA5O60443 496 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 SNAP91O60641 907 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 ENDOD1O94919 500 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 TRIM16O95361 564 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 KRT3P12035 628 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 DESP17661 470 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 DRD3P35462 400 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 PTPN9P43378 593 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 C21orf59P57076 290 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 RACK1P63244 317 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 BNC1Q01954 994 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 PTP4A2Q12974 167 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 TRIP6Q15654 476 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 CDO1Q16878 200 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 CLEC16AQ2KHT3 1053 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 C15orf59Q2T9L4 293 aaPredicted RBP6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 KIF19Q2TAC6 998 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 CCDC14Q49A88 953 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 ANO6Q4KMQ2 910 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 SLC6A19Q695T7 634 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 RETSATQ6NUM9 610 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 STRADAQ7RTN6 431 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 APTXQ7Z2E3 356 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 PHLDB2Q86SQ0 1253 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 C3orf20Q8ND61 904 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 PIP4K2CQ8TBX8 421 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 RXFP2Q8WXD0 754 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 FAM131CQ96AQ9 280 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 SIGLEC10Q96LC7 697 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 CAMK1GQ96NX5 476 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 PCDHB18PQ96TA0 734 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 AGPAT1Q99943 283 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 ORAI3Q9BRQ5 295 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 G6PC3Q9BUM1 346 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 ZYG11BQ9C0D3 744 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 TMPRSS5Q9H3S3 457 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 RETREG1Q9H6L5 497 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 IL21RQ9HBE5 538 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 AASDHPPTQ9NRN7 309 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 TM7SF3Q9NS93 570 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 GPATCH2Q9NW75 528 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 OR12D3Q9UGF7 316 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 VPS51Q9UID3 782 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 WASF3Q9UPY6 502 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 ANKRD6Q9Y2G4 727 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 PCDHGB2Q9Y5G2 931 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 SLCO1B1Q9Y6L6 691 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 SPEGQ15772 3267 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 CACNA1BQ00975 2339 aa6.94□□□□□ -1.3
CCDC88A-213ENST00000476903 CHD8Q9HCK8 2581 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TDRD6O60522 2096 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D3DA0A087WVF3 549 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D3IA0A087WXS9 549 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D3EA0A087X179 549 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D3KA0A087X1G2 549 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D3FA6NER0 549 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SOWAHDA6NJG2 315 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 SIGLEC16A6NMB1 481 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 C10orf142B7Z368 130 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 TBC1D3LB9A6J9 549 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 CBX4O00257 560 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 LATO43561 262 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 PLRG1O43660 514 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 RTN2O75298 545 aa6.93□□□□□ -1.3
CCDC88A-213ENST00000476903 MT-CO1P00395 513 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms