RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 A8MX80 341 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 ANKRD66B4E2M5 251 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 F5H423 210 aaPredicted RBP12□□□□□ -0.49
VPS13D-204ENST00000469054 PRAMEF26H0Y7S4 382 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 PGRMC1O00264 195 aaKnown RBP12□□□□□ -0.49
VPS13D-204ENST00000469054 KHNYNO15037 678 aaKnown RBP12□□□□□ -0.49
VPS13D-204ENST00000469054 SLC31A1O15431 190 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 ANXA9O76027 345 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 TM7SF2O76062 418 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 PAK4O96013 591 aaPredicted RBP12□□□□□ -0.49
VPS13D-204ENST00000469054 IFNB1P01574 187 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 EPOP01588 193 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 TRBC1P01850 177 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 ZNF806P0C7X5 589 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 CTPS1P17812 591 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 TGM1P22735 817 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 VIPR1P32241 457 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 WNT3AP56704 352 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 RACK1P63244 317 aaKnown RBP12□□□□□ -0.49
VPS13D-204ENST00000469054 SGCGQ13326 291 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 MPP3Q13368 585 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 FGL2Q14314 439 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 PRPSAP1Q14558 356 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 PCSK7Q16549 785 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 QPCTQ16769 361 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 PARP6Q2NL67 630 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 P3H1Q32P28 736 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 TRIM61Q5EBN2 209 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 CCDC70Q6NSX1 233 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 SLC23A3Q6PIS1 610 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 KDELC1Q6UW63 502 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 LIPIQ6XZB0 460 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 ARHGEF18Q6ZSZ5 1173 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 USP45Q70EL2 814 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 KDELC2Q7Z4H8 507 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 ZCCHC9Q8N567 271 aaKnown RBP12□□□□□ -0.49
VPS13D-204ENST00000469054 ASB12Q8WXK4 309 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 IFT43Q96FT9 208 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 OXNAD1Q96HP4 312 aaPredicted RBP12□□□□□ -0.49
VPS13D-204ENST00000469054 SERAC1Q96JX3 654 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 MRGPRX2Q96LB1 330 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 TRIB3Q96RU7 358 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 GORASP1Q9BQQ3 440 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 WRAP53Q9BUR4 548 aaKnown RBP12□□□□□ -0.49
VPS13D-204ENST00000469054 AP1M1Q9BXS5 423 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 TM9SF3Q9HD45 589 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 SEMA4GQ9NTN9 838 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 SMARCAL1Q9NZC9 954 aa12□□□□□ -0.49
VPS13D-204ENST00000469054 AAR2Q9Y312 384 aaKnown RBP12□□□□□ -0.49
VPS13D-204ENST00000469054 PLXND1Q9Y4D7 1925 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 LOC285095A0A1B0GVY8 99 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 NPIPB15A6NHN6 443 aaPredicted RBP11.99□□□□□ -0.49
VPS13D-204ENST00000469054 PATE3B3GLJ2 98 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 WNT9AO14904 365 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 LZTS3O60299 673 aaPredicted RBP11.99□□□□□ -0.49
VPS13D-204ENST00000469054 HEXIM1O94992 359 aaKnown RBP11.99□□□□□ -0.49
VPS13D-204ENST00000469054 NDST3O95803 873 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 ALPIP09923 528 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 ELFN1P0C7U0 828 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 C6P13671 934 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 HNRNPA2B1P22626 353 aaKnown RBP11.99□□□□□ -0.49
VPS13D-204ENST00000469054 PSMB4P28070 264 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 CASQ1P31415 396 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 AKT2P31751 481 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 ACTN2P35609 894 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 HNF1BP35680 557 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 TNNT3P45378 269 aaPredicted RBP11.99□□□□□ -0.49
VPS13D-204ENST00000469054 KCNJ1P48048 391 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 GRIA4P48058 902 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 LIG3P49916 1009 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 GEMP55040 296 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 GALNT3Q14435 633 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 STAT4Q14765 748 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 PTPRRQ15256 657 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 CSRP2Q16527 193 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 CYP1B1Q16678 543 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 NAPEPLDQ6IQ20 393 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 NYAP1Q6ZVC0 841 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 GPR161Q8N6U8 529 aaKnown RBP11.99□□□□□ -0.49
VPS13D-204ENST00000469054 CCDC89Q8N998 374 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 TMEM145Q8NBT3 493 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 IPMKQ8NFU5 416 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 ATL2Q8NHH9 583 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 MAGOHBQ96A72 148 aaKnown RBP11.99□□□□□ -0.49
VPS13D-204ENST00000469054 RMDN1Q96DB5 314 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 SLC6A18Q96N87 628 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 PPP1R2P1Q96PQ5 205 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 LENG8Q96PV6 779 aaPredicted RBP11.99□□□□□ -0.49
VPS13D-204ENST00000469054 SMIM14Q96QK8 99 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 LYSMD1Q96S90 227 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 MLPHQ9BV36 600 aaPredicted RBP11.99□□□□□ -0.49
VPS13D-204ENST00000469054 SMOC1Q9H4F8 434 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 CAPN10Q9HC96 672 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 PARD6AQ9NPB6 346 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 AASDHPPTQ9NRN7 309 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 SLC6A14Q9UN76 642 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 HS3ST3A1Q9Y663 406 aa11.99□□□□□ -0.49
VPS13D-204ENST00000469054 SHROOM3Q8TF72 1996 aa11.98□□□□□ -0.49
VPS13D-204ENST00000469054 CAPN8A6NHC0 703 aa11.98□□□□□ -0.49
VPS13D-204ENST00000469054 RAD51BO15315 384 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms