RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 PPIL6Q8IXY8 311 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 NAT8LQ8N9F0 302 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 MCUQ8NE86 351 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 LPCAT1Q8NF37 534 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 RMDN1Q96DB5 314 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 FICDQ9BVA6 458 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 TPSD1Q9BZJ3 242 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 BTBD1Q9H0C5 482 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 MAGEE1Q9HCI5 957 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 WSB2Q9NYS7 404 aaPredicted RBP11.64□□□□□ -0.55
SCN9A-204ENST00000452182 WHRNQ9P202 907 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 PCDHGA10Q9Y5H3 936 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 FADS3Q9Y5Q0 445 aa11.64□□□□□ -0.55
SCN9A-204ENST00000452182 IGHV1OR15-9A0A0B4J2B8 117 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 CAPN8A6NHC0 703 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 BHMG1C9JSJ3 638 aaPredicted RBP11.63□□□□□ -0.55
SCN9A-204ENST00000452182 H0Y858 1186 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 PLK4O00444 970 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 SPINT1O43278 529 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 MAP3K7O43318 606 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 TSPAN6O43657 245 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 CYP2A6P11509 494 aaPredicted RBP11.63□□□□□ -0.55
SCN9A-204ENST00000452182 MLNP12872 115 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 CD6P30203 668 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 MMP12P39900 470 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 MRPS25P82663 173 aaKnown RBP11.63□□□□□ -0.55
SCN9A-204ENST00000452182 DMWDQ09019 674 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 CDH17Q12864 832 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 GALNT3Q14435 633 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 SPARCL1Q14515 664 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 MORF4L2Q15014 288 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 ANGPT1Q15389 498 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 TMEM52BQ4KMG9 183 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 IZUMO3Q5VZ72 239 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 DPPA4Q7L190 304 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 KDELC2Q7Z4H8 507 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 RAVER1Q8IY67 606 aaKnown RBP11.63□□□□□ -0.55
SCN9A-204ENST00000452182 GANCQ8TET4 914 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 SPACA7Q96KW9 195 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 LRFN3Q9BTN0 628 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 FRMD8Q9BZ67 464 aaPredicted RBP11.63□□□□□ -0.55
SCN9A-204ENST00000452182 TRABDQ9H4I3 376 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 PREBQ9HCU5 417 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 PCDH12Q9NPG4 1184 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 CD93Q9NPY3 652 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 CASS4Q9NQ75 786 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 HACD3Q9P035 362 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 CYP8B1Q9UNU6 501 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 SHOC2Q9UQ13 582 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 ZNF318Q5VUA4 2279 aa11.63□□□□□ -0.55
SCN9A-204ENST00000452182 TCRBV7S3A2A0A539 114 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 TP73O15350 636 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 USP12O75317 370 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 TMEM63AO94886 807 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 SLU7O95391 586 aaKnown RBP11.62□□□□□ -0.55
SCN9A-204ENST00000452182 SP9P0CG40 484 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 ZNF30P17039 623 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 ACSL1P33121 698 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 CNR2P34972 360 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 HNF1BP35680 557 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 CHRNA4P43681 627 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 RPL21P46778 160 aaKnown RBP11.62□□□□□ -0.55
SCN9A-204ENST00000452182 FNTBP49356 437 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 CALCOCO2Q13137 446 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 MSLNQ13421 630 aaPredicted RBP11.62□□□□□ -0.55
SCN9A-204ENST00000452182 OLIG2Q13516 323 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 ANKRD22Q5VYY1 191 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 ARMC3Q5W041 872 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 HIBCHQ6NVY1 386 aaPredicted RBP11.62□□□□□ -0.55
SCN9A-204ENST00000452182 LRRC8BQ6P9F7 803 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 C11orf74Q86VG3 221 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 OR2T34Q8NGX1 318 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 OR14C36Q8NHC7 312 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 PRRX2Q99811 253 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 PCED1AQ9H1Q7 454 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 XAB2Q9HCS7 855 aaKnown RBP11.62□□□□□ -0.55
SCN9A-204ENST00000452182 ZSCAN32Q9NX65 697 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 B4GALT6Q9UBX8 382 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 SNX24Q9Y343 169 aa11.62□□□□□ -0.55
SCN9A-204ENST00000452182 NPIPB15A6NHN6 443 aaPredicted RBP11.61□□□□□ -0.55
SCN9A-204ENST00000452182 LRRC72A6NJI9 287 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 PSMD11O00231 422 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 DLL1O00548 723 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 HEXIM1O94992 359 aaKnown RBP11.61□□□□□ -0.55
SCN9A-204ENST00000452182 SEMA4FO95754 770 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 ALPIP09923 528 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 VIPR1P32241 457 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 GRIA1P42261 906 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 FAM193AP78312 1265 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 SLC7A5Q01650 507 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 RALGDSQ12967 914 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 CBLBQ13191 982 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 CDKN3Q16667 212 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 SYCP2LQ5T4T6 812 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 KIAA1161Q6NSJ0 714 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 SLC36A4Q6YBV0 504 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 PPP1R21Q6ZMI0 780 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 ZNF534Q76KX8 674 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 FAM124AQ86V42 546 aa11.61□□□□□ -0.55
SCN9A-204ENST00000452182 CBARPQ8N350 705 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms