RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 LENG1Q96BZ8 264 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TTPALQ9BTX7 342 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 CNGB3Q9NQW8 809 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 GMIPQ9P107 970 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3DA0A087WVF3 549 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3IA0A087WXS9 549 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3EA0A087X179 549 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3KA0A087X1G2 549 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3FA6NER0 549 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3LB9A6J9 549 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 ENTPD5O75356 428 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 FAM155BO75949 473 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3HP0C7X1 549 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 C4BPBP20851 252 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 ITPKAP23677 461 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 DCCP43146 1447 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 CDC42P60953 191 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 SPANXN2Q5MJ10 180 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 LIPMQ5VYY2 423 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3GQ6DHY5 549 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3CQ6IPX1 549 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D3Q8IZP1 549 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-209ENST00000438120 BSNDQ8WZ55 320 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 CPXM1Q96SM3 734 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 SLC17A7Q9P2U7 560 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TP73O15350 636 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 KRT36O76013 467 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 RHBDF2Q6PJF5 856 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 PACS1Q6VY07 963 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 OR52L1Q8NGH7 329 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 HIPK3Q9H422 1215 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 COQ6Q9Y2Z9 468 aa17.24■□□□□ 0.35
PTPRF-209ENST00000438120 TRBV23OR9-2A0A075B6M9 112 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 OTCP00480 354 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 HTR1BP28222 390 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 MSX2P35548 267 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-209ENST00000438120 SRP54P61011 504 aaKnown RBP17.23■□□□□ 0.35
PTPRF-209ENST00000438120 FUKQ8N0W3 1084 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 ZNF446Q9NWS9 450 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 OGDHLQ9ULD0 1010 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 KIDINS220Q9ULH0 1771 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 SLC28A1O00337 649 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 TREHO43280 583 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 UQCRBP14927 111 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 ITGAXP20702 1163 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 JAK1P23458 1154 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 SLC25A52Q3SY17 297 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 RFWD3Q6PCD5 774 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 ABHD15Q6UXT9 468 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 ST13P5Q8NFI4 369 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-209ENST00000438120 ZFRQ96KR1 1074 aaKnown RBP17.23■□□□□ 0.35
PTPRF-209ENST00000438120 COPS8Q99627 209 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 MRPS7Q9Y2R9 242 aaKnown RBP17.23■□□□□ 0.35
PTPRF-209ENST00000438120 GMPPBQ9Y5P6 360 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 CREMQ03060 361 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 TMC5Q6UXY8 1006 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 DEF8Q6ZN54 512 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 CAMK1DQ8IU85 385 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 TBC1D10AQ9BXI6 508 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 ERVK-5Q9HDB9 667 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 RAP2CQ9Y3L5 183 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 ARHGAP23Q9P227 1491 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 SMIM28A0A1B0GU29 152 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 AZIN1O14977 448 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 CST3P01034 146 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-209ENST00000438120 BUD31P41223 144 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-209ENST00000438120 GPR158Q5T848 1215 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 PACS2Q86VP3 889 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 HIPK1Q86Z02 1210 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 LRRC52Q8N7C0 313 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 SMYD1Q8NB12 490 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.23■□□□□ 0.354e-6■■□□□ 14.1
PTPRF-209ENST00000438120 CERS4Q9HA82 394 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 ANGPT4Q9Y264 503 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 RGSL1A5PLK6 1076 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 GLUD1P00367 558 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 IL6P05231 212 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 RABGGTBP53611 331 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 PCBP1Q15365 356 aaKnown RBP eCLIP17.23■□□□□ 0.351e-6■■■□□ 14.9
PTPRF-209ENST00000438120 DLG2Q15700 870 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 MON1AQ86VX9 555 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 ZFP28Q8NHY6 868 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 AGO3Q9H9G7 860 aaKnown RBP17.23■□□□□ 0.35
PTPRF-209ENST00000438120 IKZF3Q9UKT9 509 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 VPS4AQ9UN37 437 aa17.23■□□□□ 0.35
PTPRF-209ENST00000438120 A0A087WXM4 84 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 FAM237AA0A1B0GTK4 181 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 KLRG2A4D1S0 409 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-209ENST00000438120 TM4SF1P30408 202 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 PDK4Q16654 411 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 LINGO4Q6UY18 593 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 GET4Q7L5D6 327 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-209ENST00000438120 SCAIQ8N9R8 606 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 MYO19Q96H55 970 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 NUAK2Q9H093 628 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 TRIT1Q9H3H1 467 aaKnown RBP17.22■□□□□ 0.35
PTPRF-209ENST00000438120 VWA7Q9Y334 891 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 CST1P01037 141 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 SPIBQ01892 262 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 ADAMTSL2Q86TH1 951 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms