RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 PEX13Q92968 403 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 MFSD3Q96ES6 412 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 ZIM3Q96PE6 472 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 ASB2Q96Q27 587 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 SARDHQ9UL12 918 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 NDRG2Q9UN36 371 aaKnown RBP23.11■■□□□ 1.29
CPSF4-204ENST00000436336 FAM169AQ9Y6X4 670 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 TCRBV9S1A1TA0A576 114 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 CAPN8A6NHC0 703 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 C1QTNF3-AMACRE9PGA6 284 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 RNF40O75150 1001 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 SASH3O75995 380 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 KLF8O95600 359 aaPredicted RBP23.1■■□□□ 1.29
CPSF4-204ENST00000436336 CTPS1P17812 591 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 NMBRP28336 390 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 STX2P32856 288 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 STARD3Q14849 445 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 TAF1AQ15573 450 aaPredicted RBP23.1■■□□□ 1.29
CPSF4-204ENST00000436336 TSTD2Q5T7W7 516 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 CES3Q6UWW8 571 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 CYS1Q717R9 158 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 UBALD2Q8IYN6 164 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 TXNDC5Q8NBS9 432 aaKnown RBP23.1■■□□□ 1.29
CPSF4-204ENST00000436336 SERBP1Q8NC51 408 aaKnown RBP eCLIP23.1■■□□□ 1.29
CPSF4-204ENST00000436336 MDGA1Q8NFP4 955 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 FBF1Q8TES7 1133 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 SCRN2Q96FV2 425 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 SHDQ96IW2 340 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 ZNF778Q96MU6 729 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 FCRL3Q96P31 734 aaPredicted RBP23.1■■□□□ 1.29
CPSF4-204ENST00000436336 SMIM14Q96QK8 99 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 LYSMD1Q96S90 227 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 FBXL21Q9UKT6 434 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 RIMKLBQ9ULI2 386 aa23.1■■□□□ 1.29
CPSF4-204ENST00000436336 ZCWPW2A0A1B0GU75 182 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 KPNA3O00505 521 aaPredicted RBP23.09■■□□□ 1.29
CPSF4-204ENST00000436336 ALDH1A2O94788 518 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 IL1BP01584 269 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 ALPIP09923 528 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 NFKBIAP25963 317 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 ABL2P42684 1182 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 EIF3BP55884 814 aaKnown RBP23.09■■□□□ 1.29
CPSF4-204ENST00000436336 FRG1Q14331 258 aaKnown RBP23.09■■□□□ 1.29
CPSF4-204ENST00000436336 UGP2Q16851 508 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 LRIG3Q6UXM1 1119 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 USP45Q70EL2 814 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 PPP1R16AQ96I34 528 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 MCCC1Q96RQ3 725 aaPredicted RBP23.09■■□□□ 1.29
CPSF4-204ENST00000436336 RSPH9Q9H1X1 276 aaPredicted RBP23.09■■□□□ 1.29
CPSF4-204ENST00000436336 FBRSQ9HAH7 460 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 TREX1Q9NSU2 369 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 MOCS1Q9NZB8 636 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 RABGEF1Q9UJ41 708 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 MRPS17Q9Y2R5 130 aaKnown RBP23.09■■□□□ 1.29
CPSF4-204ENST00000436336 ZNF711Q9Y462 761 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 NFS1Q9Y697 457 aa23.09■■□□□ 1.29
CPSF4-204ENST00000436336 ZNF106Q9H2Y7 1883 aaKnown RBP23.08■■□□□ 1.29
CPSF4-204ENST00000436336 C2orf81A6NN90 581 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 C16orf96A6NNT2 1141 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 ADAM23O75077 832 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 SHBGP04278 402 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 HOXB2P14652 356 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 ITGB7P26010 798 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 HNF1BP35680 557 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 STARD6P59095 220 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 PDE1BQ01064 536 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 STAT4Q14765 748 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 FAM46CQ5VWP2 391 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 CCDC77Q9BR77 488 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 ACSS3Q9H6R3 686 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 ARL5AQ9Y689 179 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 COL6A3P12111 3177 aa23.08■■□□□ 1.29
CPSF4-204ENST00000436336 KRBA1A5PL33 1030 aa23.08■■□□□ 1.28
CPSF4-204ENST00000436336 RNASEH1O60930 286 aaKnown RBP23.08■■□□□ 1.28
CPSF4-204ENST00000436336 PAMP19021 973 aa23.08■■□□□ 1.28
CPSF4-204ENST00000436336 IFFO1Q0D2I5 559 aa23.08■■□□□ 1.28
CPSF4-204ENST00000436336 ESRP1Q6NXG1 681 aaKnown RBP23.08■■□□□ 1.28
CPSF4-204ENST00000436336 MMAAQ8IVH4 418 aaKnown RBP23.08■■□□□ 1.28
CPSF4-204ENST00000436336 OR2T3Q8NH03 318 aa23.08■■□□□ 1.28
CPSF4-204ENST00000436336 OR2W6PQ8NHA6 318 aa23.08■■□□□ 1.28
CPSF4-204ENST00000436336 RPLP0P6Q8NHW5 317 aa23.08■■□□□ 1.28
CPSF4-204ENST00000436336 STYXQ8WUJ0 223 aa23.08■■□□□ 1.28
CPSF4-204ENST00000436336 ACBD3Q9H3P7 528 aa23.08■■□□□ 1.28
CPSF4-204ENST00000436336 CCDC78A2IDD5 438 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 UPK3BL1B0FP48 263 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 UPK3BL2E5RIL1 263 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 AURKAO14965 403 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 TIMP2P16035 220 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 PTPRRQ15256 657 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 KLHL38Q2WGJ6 581 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 EOGTQ5NDL2 527 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 ZNF449Q6P9G9 518 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 PARS2Q7L3T8 475 aaKnown RBP23.07■■□□□ 1.28
CPSF4-204ENST00000436336 ZNF687Q8N1G0 1237 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 SYNPOQ8N3V7 929 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 CERS2Q96G23 380 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 RUFY1Q96T51 708 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 CYTH2Q99418 400 aa23.07■■□□□ 1.28
CPSF4-204ENST00000436336 CHRNB1P11230 501 aa23.06■■□□□ 1.28
CPSF4-204ENST00000436336 LPOP22079 712 aaPredicted RBP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms