RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CHRM4P08173 479 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 HLA-DOBP13765 273 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 CST5P28325 142 aaPredicted RBP4.61□□□□□ -1.67
LINC01040-201ENST00000425048 HOXC13P31276 330 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 TUBB4BP68371 445 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 EDRF1Q3B7T1 1238 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 XRRA1Q6P2D8 792 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 DENND1BQ6P3S1 775 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 B3GNT6Q6ZMB0 384 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 ODF3L1Q8IXM7 274 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 SLC24A4Q8NFF2 622 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 SNAPC3Q92966 411 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 ALG14Q96F25 216 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 CHODLQ9H9P2 273 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 PLEKHA5Q9HAU0 1116 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 ARNT2Q9HBZ2 717 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 MCM9Q9NXL9 1143 aa4.61□□□□□ -1.67
LINC01040-201ENST00000425048 AKR1B15C9JRZ8 316 aaPredicted RBP4.6□□□□□ -1.67
LINC01040-201ENST00000425048 DHX16O60231 1041 aaKnown RBP4.6□□□□□ -1.67
LINC01040-201ENST00000425048 ZNF500O60304 480 aaPredicted RBP4.6□□□□□ -1.67
LINC01040-201ENST00000425048 PCNAP12004 261 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 PTPN2P17706 415 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 CHATP28329 748 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 NR1H2P55055 460 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 ITGADQ13349 1161 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 KCNT1Q5JUK3 1230 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 GFRALQ6UXV0 394 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 KMT5CQ86Y97 462 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 ZNF248Q8NDW4 579 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 GJC3Q8NFK1 279 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 SH3KBP1Q96B97 665 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 SDCCAG3Q96C92 435 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 LRRC1Q9BTT6 524 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 CSTL1Q9H114 145 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 TMEM30AQ9NV96 361 aa4.6□□□□□ -1.67
LINC01040-201ENST00000425048 ARHGAP10A1A4S6 786 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 DVL1O14640 695 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 ITGAXP20702 1163 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 TMPOP42166 694 aaKnown RBP4.59□□□□□ -1.67
LINC01040-201ENST00000425048 PRKAA2P54646 552 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 DVL1P1P54792 670 aaPredicted RBP4.59□□□□□ -1.67
LINC01040-201ENST00000425048 FOXO1Q12778 655 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 ZNF876PQ49A33 203 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 ARHGAP17Q68EM7 881 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 LCTLQ6UWM7 567 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 ZNF497Q6ZNH5 498 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 TBC1D26Q86UD7 250 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 TMEM219Q86XT9 240 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 BBS10Q8TAM1 723 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 FKRPQ9H9S5 495 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 CISD1Q9NZ45 108 aaKnown RBP4.59□□□□□ -1.67
LINC01040-201ENST00000425048 A3GALT2U3KPV4 340 aa4.59□□□□□ -1.67
LINC01040-201ENST00000425048 A0A0U1RQF3 1178 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 BAG4O95429 457 aaKnown RBP4.58□□□□□ -1.68
LINC01040-201ENST00000425048 SETSIPP0DME0 302 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 PAX1P15863 534 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 USP8P40818 1118 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 AARSP49588 968 aaKnown RBP eCLIP4.58□□□□□ -1.68
LINC01040-201ENST00000425048 BLKP51451 505 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 DRG2P55039 364 aaKnown RBP4.58□□□□□ -1.68
LINC01040-201ENST00000425048 YWHAZP63104 245 aaKnown RBP4.58□□□□□ -1.68
LINC01040-201ENST00000425048 KRT72Q14CN4 511 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 PDSS1Q5T2R2 415 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 ZC2HC1BQ5TFG8 222 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 TRNP1Q6NT89 227 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 WDR63Q8IWG1 891 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 CPXM2Q8N436 756 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 MAPK1IP1LQ8NDC0 245 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 OR10V1Q8NGI7 309 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 SLC20A1Q8WUM9 679 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 RND1Q92730 232 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 ZC3HAV1LQ96H79 300 aaKnown RBP4.58□□□□□ -1.68
LINC01040-201ENST00000425048 C17orf77Q96MU5 243 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 SMYD2Q9NRG4 433 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 SUFUQ9UMX1 484 aa4.58□□□□□ -1.68
LINC01040-201ENST00000425048 CBY3A6NI87 242 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 HSPB2A8KAH6 182 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 CSTBP04080 98 aaKnown RBP4.57□□□□□ -1.68
LINC01040-201ENST00000425048 TERF1P54274 439 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 SEC61BP60468 96 aaKnown RBP4.57□□□□□ -1.68
LINC01040-201ENST00000425048 HSPB2Q16082 182 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 CTF1Q16619 201 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 CCNYL2Q5T2Q4 361 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 SLC35E4Q6ICL7 350 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 ZNF852Q6ZMS4 543 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 CHERPQ8IWX8 916 aaKnown RBP4.57□□□□□ -1.68
LINC01040-201ENST00000425048 ADAD2Q8NCV1 583 aaKnown RBP4.57□□□□□ -1.68
LINC01040-201ENST00000425048 RUBCNQ92622 972 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 ABTB1Q969K4 478 aaPredicted RBP4.57□□□□□ -1.68
LINC01040-201ENST00000425048 ZNF583Q96ND8 569 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 TWSG1Q9GZX9 223 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 SAYSD1Q9NPB0 183 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 CNGB3Q9NQW8 809 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 SRP68Q9UHB9 627 aaKnown RBP4.57□□□□□ -1.68
LINC01040-201ENST00000425048 PADI1Q9ULC6 663 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 OBSCNQ5VST9 7968 aa4.57□□□□□ -1.68
LINC01040-201ENST00000425048 C17orf113A0A1B0GUU1 675 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 PCDH7O60245 1069 aa4.56□□□□□ -1.68
LINC01040-201ENST00000425048 GNL1P36915 607 aaPredicted RBP4.56□□□□□ -1.68
LINC01040-201ENST00000425048 CUL4BQ13620 913 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms