RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CDYL2Q8N8U2 506 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 AVL9Q8NBF6 648 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 CPNE2Q96FN4 548 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ZIM3Q96PE6 472 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 OR12D3Q9UGF7 316 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 RGSL1A5PLK6 1076 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PER2O15055 1255 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 CCNB1P14635 433 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 TTKP33981 857 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 SPIBQ01892 262 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PAPD7Q5XG87 772 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 APTXQ7Z2E3 356 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 SNX32Q86XE0 403 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 TMPRSS6Q8IU80 811 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 GALNT13Q8IUC8 556 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 CLEC10AQ8IUN9 316 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 LIX1Q8N485 282 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 APOPT1Q96IL0 206 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PCSK2P16519 638 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 AGXTP21549 392 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 FSTL5Q8N475 847 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 RASSF5Q8WWW0 418 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ERLEC1Q96DZ1 483 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 TMEM27Q9HBJ8 222 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 FRMPD4Q14CM0 1322 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 TARBP1Q13395 1621 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 DLC1Q96QB1 1528 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 A0A087WXM4 84 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 SCGB2A1O75556 95 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PGK1P00558 417 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PDHA2P29803 388 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 CASP6P55212 293 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 BMPR2Q13873 1038 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 SQLEQ14534 574 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 NBPF12Q5TAG4 269 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 WNT8BQ93098 351 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 TRAPPC9Q96Q05 1148 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 WDR24Q96S15 920 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 CRISPLD1Q9H336 500 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 TOR4AQ9NXH8 423 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ABCA6Q8N139 1617 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 SPATA31E1Q6ZUB1 1445 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 SLC15A5A6NIM6 579 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 NEDD8-MDP1E9PL57 170 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 CHADO15335 359 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 OR10H3O60404 316 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 SELENOVP59797 346 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PPIDQ08752 370 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 MAPK11Q15759 364 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 GJB7Q6PEY0 223 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 CNSTQ6PJW8 725 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 RBM23Q86U06 439 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 MPP5Q8N3R9 675 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 POP1Q99575 1024 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 IL12RB2Q99665 862 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF717Q9BY31 904 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 EHD3Q9NZN3 535 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 XPR1Q9UBH6 696 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 UPB1Q9UBR1 384 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 LEF1Q9UJU2 399 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 C3orf18Q9UK00 162 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ADAM28Q9UKQ2 775 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 GNEQ9Y223 722 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ACTL7BQ9Y614 415 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 MYH1P12882 1939 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 MYH4Q9Y623 1939 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 DCLK1O15075 740 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 EIF4BP23588 611 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PTPN4P29074 926 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 GNALP38405 381 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ASMTP46597 345 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 FKBP1AP62942 108 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 OLR1P78380 273 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PRR5P85299 388 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 KCNMA1Q12791 1236 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 DCTN2Q13561 401 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 BICRALQ6AI39 1079 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 TTC27Q6P3X3 843 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF730Q6ZMV8 503 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 FAM124AQ86V42 546 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 RAVER1Q8IY67 606 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 EMC1Q8N766 993 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PPCDCQ96CD2 204 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 MRPL57Q9BQC6 102 aaKnown RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 RNF121Q9H920 327 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 C8orf4Q9NR00 106 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 SYNPO2Q9UMS6 1093 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 SLC37A4O43826 429 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 SH3BGRLO75368 114 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 IDH2P48735 452 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 KLK7P49862 253 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 CASP9P55211 416 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 HSF2Q03933 536 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 MTF1Q14872 753 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PIK3R6Q5UE93 754 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 CAPN13Q6MZZ7 669 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 DNAJC14Q6Y2X3 702 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 STRADAQ7RTN6 431 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 MTDHQ86UE4 582 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF527Q8NB42 609 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms