RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 AP4S1Q9Y587 144 aa14.35□□□□□ -0.11
CD48-201ENST00000368045 NUP205Q92621 2012 aa14.35□□□□□ -0.11
CD48-201ENST00000368045 E7ENX8 843 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 FBP2O00757 339 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 MRASO14807 208 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 RNASEH2AO75792 299 aaKnown RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 SRP72O76094 671 aaKnown RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 S1PR4O95977 384 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 FAM58BPP0C7Q3 252 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 SLC7A1P30825 629 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 CD86P42081 329 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 C1QTNF8P60827 252 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 STX1BP61266 288 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 ACVR1Q04771 509 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 MAP7Q14244 749 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 PAN2Q504Q3 1202 aaKnown RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 ZNF678Q5SXM1 525 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 ZNF280DQ6N043 979 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 C8orf82Q6P1X6 216 aaPredicted RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 KDELC2Q7Z4H8 507 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 RNF135Q8IUD6 432 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 ALDH16A1Q8IZ83 802 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 RNF148Q8N7C7 305 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 GPR150Q8NGU9 434 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 DTNBP1Q96EV8 351 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 UHRF1Q96T88 793 aaPredicted RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 EFHD1Q9BUP0 239 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 SLC2A11Q9BYW1 496 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 UNKQ9C0B0 810 aaKnown RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 FBXO44Q9H4M3 255 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 NMUR1Q9HB89 426 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 TMEM181Q9P2C4 612 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 CROTQ9UKG9 612 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 RIMKLBQ9ULI2 386 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 LZTS1Q9Y250 596 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 IGLV3-10A0A075B6K4 115 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 TCRBV3S1A0A5B6 114 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 MYADML2A6NDP7 307 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 MGEA5O60502 916 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 STAMBPO95630 424 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 TFAP2AP05549 437 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 MMP2P08253 660 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 HSPA8P11142 646 aaKnown RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 MSX2P35548 267 aaPredicted RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 TBX4P57082 545 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 USP46P62068 366 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 HERVK_113P63132 956 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 PRAMEP78395 509 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 YWHAHQ04917 246 aaPredicted RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 BTG3Q14201 252 aaPredicted RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 MGAT5BQ3V5L5 792 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 GNASQ5JWF2 1037 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 PRMT9Q6P2P2 845 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 LARP4Q71RC2 724 aaKnown RBP eCLIP14.34□□□□□ -0.11
CD48-201ENST00000368045 SATL1Q86VE3 508 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 DCP1BQ8IZD4 617 aaKnown RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 ATP6V0D2Q8N8Y2 350 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 PBXIP1Q96AQ6 731 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 HMCESQ96FZ2 354 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 FUBP3Q96I24 572 aaKnown RBP eCLIP14.34□□□□□ -0.11
CD48-201ENST00000368045 C8orf48Q96LL4 319 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 ERVK-6Q9BXR3 956 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 UPF3AQ9H1J1 476 aaKnown RBP14.34□□□□□ -0.11
CD48-201ENST00000368045 SP110Q9HB58 689 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 PTTG2Q9NZH5 202 aa14.34□□□□□ -0.11
CD48-201ENST00000368045 LOC285095A0A1B0GVY8 99 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 NRP2O60462 931 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 RTN3O95197 1032 aaPredicted RBP14.33□□□□□ -0.12
CD48-201ENST00000368045 ZNF26P17031 533 aaPredicted RBP14.33□□□□□ -0.12
CD48-201ENST00000368045 FDXRP22570 491 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 YY1P25490 414 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 CD52P31358 61 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 PGFP49763 221 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 SUOXP51687 545 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 IL10RBQ08334 325 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 ITKQ08881 620 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 NOMO2Q5JPE7 1267 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 IL23RQ5VWK5 629 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 ISCA2Q86U28 154 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 CLYBLQ8N0X4 340 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 PCDH20Q8N6Y1 951 aaKnown RBP14.33□□□□□ -0.12
CD48-201ENST00000368045 PCYOX1LQ8NBM8 494 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 OR6P1Q8NGX9 317 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 ANKRD49Q8WVL7 239 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 LPGAT1Q92604 370 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 HDAC10Q969S8 669 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 ZNF597Q96LX8 424 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 ZCWPW1Q9H0M4 648 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 TNFRSF12AQ9NP84 129 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 FIS1Q9Y3D6 152 aa14.33□□□□□ -0.12
CD48-201ENST00000368045 MTF2Q9Y483 593 aaPredicted RBP14.33□□□□□ -0.12
CD48-201ENST00000368045 FGF4P08620 206 aa14.32□□□□□ -0.12
CD48-201ENST00000368045 CDKN2DP55273 166 aa14.32□□□□□ -0.12
CD48-201ENST00000368045 NKX3-2P78367 333 aa14.32□□□□□ -0.12
CD48-201ENST00000368045 TXNL4AP83876 142 aaKnown RBP14.32□□□□□ -0.12
CD48-201ENST00000368045 MYBPC1Q00872 1141 aa14.32□□□□□ -0.12
CD48-201ENST00000368045 DSC2Q02487 901 aa14.32□□□□□ -0.12
CD48-201ENST00000368045 APOFQ13790 326 aa14.32□□□□□ -0.12
CD48-201ENST00000368045 NFE2Q16621 373 aaPredicted RBP14.32□□□□□ -0.12
CD48-201ENST00000368045 PARP15Q460N3 678 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms